RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 A1CFQ9NQ94 594 aaKnown RBP10.86□□□□□ -0.67
VCL-201ENST00000211998 SPATA2Q9UM82 520 aa10.86□□□□□ -0.67
VCL-201ENST00000211998 HBS1LQ9Y450 684 aaKnown RBP10.86□□□□□ -0.67
VCL-201ENST00000211998 TSPOAP1O95153 1857 aa10.86□□□□□ -0.67
VCL-201ENST00000211998 IQGAP3Q86VI3 1631 aa10.86□□□□□ -0.67
VCL-201ENST00000211998 PNPLA7Q6ZV29 1317 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 MEI4A8MW99 385 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ZNF862O60290 1169 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ALOX12P18054 663 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 TMC3Q7Z5M5 1100 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 SP8Q8IXZ3 490 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.85□□□□□ -0.67
VCL-201ENST00000211998 ITFG2Q969R8 447 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ARHGEF26Q96DR7 871 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 TRIM62Q9BVG3 475 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 MAGEB5Q9BZ81 275 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 APEX2Q9UBZ4 518 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CNOT7Q9UIV1 285 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 POTEFA5A3E0 1075 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 POTEIP0CG38 1075 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 JAK1P23458 1154 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 RPL5P46777 297 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 XRCC4Q13426 336 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 GSTA3Q16772 222 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 KCNV1Q6PIU1 500 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 POTEGQ6S5H5 508 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 MSL3Q8N5Y2 521 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 C7orf25Q9BPX7 421 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 C6orf62Q9GZU0 229 aaPredicted RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 ZNF556Q9HAH1 456 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 GDF3Q9NR23 364 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 SAR1AQ9NR31 198 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 USE1Q9NZ43 259 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 SRRM3A6NNA2 597 aaPredicted RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 APOL1O14791 398 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ENTPD5O75356 428 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 FKBP9O95302 570 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CACNB3P54284 484 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 NDUFA5Q16718 116 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 COBLL1Q53SF7 1204 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 TWF2Q6IBS0 349 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 FKBP9P1Q75LS8 142 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 NOP9Q86U38 636 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 SYNE4Q8N205 404 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 PLEKHG4BQ96PX9 1271 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 GINS4Q9BRT9 223 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 MRPL4Q9BYD3 311 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 SELENONQ9NZV5 590 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 NAALADL1Q9UQQ1 740 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 A0A087WXM4 84 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ABLIM1O14639 778 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ATMINO43313 823 aaPredicted RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 UNC5CO95185 931 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 HOXD10P28358 340 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 PDK3Q15120 406 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 PERM1Q5SV97 790 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 ARHGAP17Q68EM7 881 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 RNF19BQ6ZMZ0 732 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 SZRD1Q7Z422 152 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 KBTBD2Q8IY47 623 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 UBASH3BQ8TF42 649 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 OTULINQ96BN8 352 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 PGBD4Q96DM1 585 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CHID1Q9BWS9 393 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 TMEM260Q9NX78 707 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 WHRNQ9P202 907 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 DNAJC16Q9Y2G8 782 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 RWDD3Q9Y3V2 267 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 A0A087X0T9 212 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 DENND3A2RUS2 1198 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 RIPK2O43353 540 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 FAM228BP0C875 321 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CD44P16070 742 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 ARPC4P59998 168 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 USP10Q14694 798 aaKnown RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 SLC5A9Q2M3M2 681 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 UTS2BQ765I0 119 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 PYDC1Q8WXC3 89 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CPA5Q8WXQ8 436 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CCSER1Q9C0I3 900 aa10.85□□□□□ -0.67
VCL-201ENST00000211998 CLEC4MQ9H2X3 399 aaPredicted RBP10.85□□□□□ -0.67
VCL-201ENST00000211998 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.84□□□□□ -0.67
VCL-201ENST00000211998 DPPA5A6NC42 116 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L15C9J2P7 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L13C9JLJ4 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L11C9JVI0 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L18D6R9N7 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L22D6RA61 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L17D6RBQ6 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L19D6RCP7 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L20D6RJB6 530 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 PDXKO00764 312 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 SNPHO15079 494 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 KIAA0391O15091 583 aaKnown RBP10.84□□□□□ -0.67
VCL-201ENST00000211998 SLC16A4O15374 487 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 SNX3O60493 162 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 MED26O95402 600 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 VAV1P15498 845 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 SDC4P31431 198 aa10.84□□□□□ -0.67
VCL-201ENST00000211998 USP17L24Q0WX57 530 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms