RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 MYL12AP19105 171 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 DNAJC3Q13217 504 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 KYNUQ16719 465 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF398Q8TD17 642 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 BLOC1S5Q8TDH9 187 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 UCMAQ8WVF2 138 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CNDP1Q96KN2 507 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 TRIM51Q9BSJ1 452 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 UBXN6Q9BZV1 441 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ACAD9Q9H845 621 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SAR1AQ9NR31 198 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 NFKBIL1Q9UBC1 381 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 QSOX1O00391 747 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 VWA5AO00534 786 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 VCPP55072 806 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CTTNQ14247 550 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 IZUMO3Q5VZ72 239 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 HAUS6Q7Z4H7 955 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 C8orf37Q96NL8 207 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SLITRK1Q96PX8 696 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 FER1L6Q2WGJ9 1857 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 TCP11X1B4DZS4 312 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 LIN7AO14910 233 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 SRP72O76094 671 aaKnown RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 FBXO21O94952 628 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ERCC2P18074 760 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CRKP46108 304 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CTDSPL2Q05D32 466 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 IER5Q5VY09 327 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 DSTYKQ6XUX3 929 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 MAEAQ7L5Y9 396 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ZBTB33Q86T24 672 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 TTLL11Q8NHH1 800 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RIN2Q8WYP3 895 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 CRELD1Q96HD1 420 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 C9orf16Q9BUW7 83 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 RXFP1Q9HBX9 757 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 AVENQ9NQS1 362 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-201ENST00000011700 PREX1Q8TCU6 1659 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 ARID1AO14497 2285 aa6.31□□□□□ -1.4
VPS13D-201ENST00000011700 A0A0D9SFI3 127 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 KPNA5O15131 536 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RGS20O76081 388 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RCVRNP35243 200 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RFX4Q33E94 735 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC184Q52MB2 194 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 GJC2Q5T442 439 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 MOXD1Q6UVY6 613 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 CDK20Q8IZL9 346 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 WDR36Q8NI36 951 aaKnown RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 FAM162AQ96A26 154 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PDLIM2Q96JY6 352 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 C7orf25Q9BPX7 421 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 EPB41L4BQ9H329 900 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 BTG4Q9NY30 223 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 BTBD7Q9P203 1132 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 FHOD1Q9Y613 1164 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PNPLA7Q6ZV29 1317 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 MAGI3Q5TCQ9 1506 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 A0A1B0GTH6 734 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PEX1O43933 1283 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 GRIN3BO60391 1043 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 CYP2E1P05181 493 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 APRTP07741 180 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PDHA1P08559 390 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 ATP1A3P13637 1013 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 NR4A1P22736 598 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 MMGT1Q8N4V1 131 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RAD54LQ92698 747 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 NLNQ9BYT8 704 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 ISCUQ9H1K1 167 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 HHATLQ9HCP6 504 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 ARHGEF38Q9NXL2 777 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 USP1O94782 785 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RHOBTB1O94844 696 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC130P13994 396 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 SCNN1DP51172 638 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 GFPT1Q06210 699 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PDIA2Q13087 525 aaKnown RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 NAB2Q15742 525 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 DCAF4L1Q3SXM0 396 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 FIGNQ5HY92 759 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 STK40Q8N2I9 435 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 NOA1Q8NC60 698 aaKnown RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 SLC7A5P2Q9GIP4 190 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RABGEF1Q9UJ41 708 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PPEF1O14829 653 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 IL12AP29459 219 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PRIM2P49643 509 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RENBPP51606 427 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 TOP3AQ13472 1001 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 TCEA2Q15560 299 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 SV2CQ496J9 727 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PDZK1Q5T2W1 519 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 MZT2BQ6NZ67 158 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 RNF217Q8TC41 542 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 PABPC3Q9H361 631 aaKnown RBP6.3□□□□□ -1.4
VPS13D-201ENST00000011700 SERHL2Q9H4I8 314 aa6.3□□□□□ -1.4
VPS13D-201ENST00000011700 MANSC1Q9H8J5 431 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms