RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Cd300ldQ8VCH2 221 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Fam173bQ9D1Z3 247 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Zbtb12Q9Z150 459 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Cntnap5cQ0V8T7 1305 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Myh2G3UW82 1942 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ccdc194A0A140LIT1 234 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Cdk14O35495 469 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Pja1O55176 578 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 HunkO88866 714 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 IapP03975 557 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Eno3P21550 434 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Marcksl1P28667 200 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Cd86P42082 309 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Vps4bP46467 444 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 GsapQ3TCV3 858 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 EtfbQ9DCW4 255 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Disp2Q8CIP5 1345 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Morc3F7BJB9 942 aaKnown RBP16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Tlk2O55047 718 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 CstaP56567 97 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Gbp10Q000W5 611 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Q3TQQ9 903 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Dennd2cQ6P9P8 914 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Srrm3Q80WV7 648 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Amz1Q8BVF9 502 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Dcun1d2Q8BZJ7 259 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Unc5bQ8K1S3 945 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mtss1Q8R1S4 759 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Dnajc14Q921R4 703 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mxra8Q9DBV4 442 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ppp1r2Q9DCL8 206 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cnga3Q9JJZ8 631 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 CflarO35732 481 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Krt1P04104 637 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Kcna3P16390 528 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 PtpraP18052 829 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mov10P23249 1004 aaKnown RBP16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cops2P61202 443 aaKnown RBP16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Fdxacb1Q3UY23 622 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Atp4aQ64436 1033 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Camta2Q80Y50 1208 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Lypla2Q9WTL7 231 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ccndbp1Q3TVC7 356 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mief2Q5NCS9 454 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Rab3ipQ68EF0 428 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Lrfn2Q80TG9 788 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 RubcnQ80U62 956 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Rtfdc1Q99K95 307 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Zmat2Q9CPW7 199 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 4930544D05RikJ3QK56 214 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mmp10O55123 476 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ssxb5Q6XAS2 159 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Plcb4Q91UZ1 1175 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 FtcdQ91XD4 541 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Dcaf6Q9DC22 876 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Zscan12Q9Z1D7 501 aa16.2■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 FscbA1EGX6 1074 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Magea4F2Z493 315 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Rbm20Q3UQS8 1199 aaKnown RBP16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 E2f5Q61502 335 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Chn2Q80XD1 332 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Lamtor4Q8CF66 99 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Angel2Q8K1C0 544 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Msi2Q920Q6 346 aaKnown RBP16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Lztr1Q9CQ33 837 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Slc27a2O35488 620 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Nr2c1Q505F1 590 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Prkaa1Q5EG47 559 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Heatr9Q5QNV8 569 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Cog3Q8CI04 820 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Med21Q9CQ39 144 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Rnf14Q9JI90 485 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Scgb2b12S4R2L0 112 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 2210011C24RikA0A087WQ89 206 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Ccdc144bE9PVZ3 520 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 C130060K24RikG3UWA8 416 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Akap1O08715 857 aaKnown RBP16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 UgcgO88693 394 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Lpar1P61793 364 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Havcr2Q8VIM0 281 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Tk2Q9R088 270 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Astn1Q61137 1302 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Skint3A7TZF0 458 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Prl6a1O35257 230 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Smyd1P97443 490 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Plekha4Q8VC98 588 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Snx9Q91VH2 595 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 PdgfdQ925I7 370 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Pold3Q9EQ28 462 aa16.19■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Atp8b4A2ANX3 1194 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup10A2BIN1 180 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup14A2CEK7 180 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Rabgap1lA6H6A9 815 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup19A9C497 187 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup15A9R9W0 180 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup17B5X0G2 180 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup8E9PVW0 235 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup7E9QA79 235 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup6P02762 180 aa16.18■□□□□ 0.18
Ccdc88b-201ENSMUST00000113440 Mup1P11588 180 aa16.18■□□□□ 0.18
Retrieved 100 of 22,080 RNA–protein pairs in 17.8 ms