RNA–Protein interactions for RNA: YKL185W

ASH1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene ASH1, Length 1,767 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cellular bud, Cytoplasm, Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASH1	YKL185W	BOR1	P53838	576 aa		4.65	□□□□□ -1.67
ASH1	YKL185W	YHP1	Q04116	353 aa		4.65	□□□□□ -1.67
ASH1	YKL185W	ARC18	Q05933	178 aa	Known RBP	4.65	□□□□□ -1.67
ASH1	YKL185W	HRD1	Q08109	551 aa		4.65	□□□□□ -1.67
ASH1	YKL185W	WIP1	Q2V2P8	89 aa		4.65	□□□□□ -1.67
ASH1	YKL185W	YOR032W-A	Q8TGS1	66 aa		4.65	□□□□□ -1.67
ASH1	YKL185W	NNK1	P36003	928 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	YHL044W	P38727	235 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	FYV4	P38783	130 aa	Predicted RBP	4.64	□□□□□ -1.67
ASH1	YKL185W	HUA1	P40325	198 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	YIL029C	P40538	142 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	ECO1	P43605	281 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	YNR064C	P53750	290 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	ATG4	P53867	494 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	BOL1	Q3E793	110 aa		4.64	□□□□□ -1.67
ASH1	YKL185W	DAL82	P21705	255 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	PSD1	P39006	500 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	PRM5	P40476	318 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	COX18	P53239	316 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	SWT21	P53873	357 aa	Predicted RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	NUP53	Q03790	475 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	RIP-Chip
ASH1	YKL185W	FSF1	Q12029	327 aa	Known RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	MRS1	P07266	363 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	RPL23A	P0CX41	137 aa	Known RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	RPL23B	P0CX42	137 aa	Known RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	ROX3	P25046	220 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	RAD23	P32628	398 aa	Known RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	YHR138C	P38841	114 aa	Predicted RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	POP3	P53833	195 aa	Predicted RBP	4.63	□□□□□ -1.67
ASH1	YKL185W	RAV2	Q03956	351 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	DPP1	Q05521	289 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	POS5	Q06892	414 aa		4.63	□□□□□ -1.67
ASH1	YKL185W	CYC7	P00045	113 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	ADH1	P00330	348 aa	Known RBP	4.62	□□□□□ -1.67
ASH1	YKL185W	FEN2	P25621	512 aa	Known RBP	4.62	□□□□□ -1.67
ASH1	YKL185W	YPT53	P36019	220 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	YBR220C	P38318	560 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	YFL054C	P43549	646 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	ABM1	P47146	123 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	BRP1	P53194	125 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	VPS71	Q03433	280 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	API2	Q04413	109 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	YPS3	Q12303	508 aa		4.62	□□□□□ -1.67
ASH1	YKL185W	REC104	P33323	182 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	ECM33	P38248	429 aa	Known RBP	4.61	□□□□□ -1.67
ASH1	YKL185W	YHR173C	P38864	112 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	OST1	P41543	476 aa	Known RBP	4.61	□□□□□ -1.67
ASH1	YKL185W	UBC13	P52490	153 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	TOM7	P53507	60 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	CRZ1	P53968	678 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	ATP19	P81451	68 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	YDR209C	Q03480	137 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	UPS1	Q05776	175 aa		4.61	□□□□□ -1.67
ASH1	YKL185W	RPL7B	Q12213	244 aa	Known RBP	4.61	□□□□□ -1.67
ASH1	YKL185W	YFL068W	P0CX99	160 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	YLL066W-A	P0CY00	160 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	YLL067W-A	P0CY01	160 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	CDC43	P18898	376 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	HSP12	P22943	109 aa	Known RBP	4.6	□□□□□ -1.67
ASH1	YKL185W	FZF1	P32805	299 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	MRPS5	P33759	307 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	HSK3	P69852	69 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	YML079W	Q03629	201 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	SCW10	Q04951	389 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	RAF1	Q06891	181 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	UTP23	Q12339	254 aa	Known RBP	4.6	□□□□□ -1.67
ASH1	YKL185W	SEN1	Q00416	2231 aa	Known RBP	4.6	□□□□□ -1.67
ASH1	YKL185W	TIR1	P10863	254 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	DUT1	P33317	147 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	MRPL39	P36533	70 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	MTC6	P38849	526 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	MRPL19	P53875	158 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	BET5	Q03630	159 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	YDR391C	Q04170	232 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	YIL102C-A	Q2V2P5	75 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	YGL258W-A	Q3E740	77 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	Q0144	Q9ZZW2	109 aa		4.6	□□□□□ -1.67
ASH1	YKL185W	TOR2	P32600	2474 aa	Known RBP	4.59	□□□□□ -1.67
ASH1	YKL185W	RPP2A	P05319	106 aa	Known RBP	4.59	□□□□□ -1.67
ASH1	YKL185W	RPL7A	P05737	244 aa	Known RBP	4.59	□□□□□ -1.67
ASH1	YKL185W	HYP2	P23301	157 aa	Known RBP	4.59	□□□□□ -1.67
ASH1	YKL185W	TOM40	P23644	387 aa	Known RBP	4.59	□□□□□ -1.67
ASH1	YKL185W	YAR068W	P39564	161 aa		4.59	□□□□□ -1.67
ASH1	YKL185W	YPR098C	Q06089	161 aa		4.59	□□□□□ -1.67
ASH1	YKL185W	FIT2	Q08906	153 aa		4.59	□□□□□ -1.67
ASH1	YKL185W	VPS63	O13549	108 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	RPL12A	P0CX53	165 aa	Known RBP	4.58	□□□□□ -1.68
ASH1	YKL185W	RPL12B	P0CX54	165 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	SOR1	P35497	357 aa	Known RBP	4.58	□□□□□ -1.68
ASH1	YKL185W	DOG2	P38773	246 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	YER084W	P40057	128 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	EGT2	P42835	1041 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	DIA1	P54005	336 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	SOR2	Q07786	357 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	TIM18	Q08749	192 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	AYT1	Q12226	474 aa		4.58	□□□□□ -1.68
ASH1	YKL185W	PIS1	P06197	220 aa	Known RBP	4.58	□□□□□ -1.68
ASH1	YKL185W	MRPL31	P14063	131 aa	Predicted RBP	4.58	□□□□□ -1.68
ASH1	YKL185W	YMR31	P19955	123 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 26.5 ms