RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YDL242WQ07746 117 aa3.56□□□□□ -1.84
SSH4YKL124W YOL118CQ08259 102 aa3.56□□□□□ -1.84
SSH4YKL124W ATP14Q12349 124 aa3.56□□□□□ -1.84
SSH4YKL124W ATO3Q12359 275 aa3.56□□□□□ -1.84
SSH4YKL124W CAP2P13517 287 aa3.55□□□□□ -1.84
SSH4YKL124W FMT1P32785 401 aa3.55□□□□□ -1.84
SSH4YKL124W YPT53P36019 220 aa3.55□□□□□ -1.84
SSH4YKL124W MRPL3P36516 390 aa3.55□□□□□ -1.84
SSH4YKL124W DOG2P38773 246 aa3.55□□□□□ -1.84
SSH4YKL124W DOG1P38774 246 aa3.55□□□□□ -1.84
SSH4YKL124W CAT5P41735 233 aa3.55□□□□□ -1.84
SSH4YKL124W YNL234WP53857 426 aa3.55□□□□□ -1.84
SSH4YKL124W ALG9P53868 555 aaKnown RBP3.55□□□□□ -1.84
SSH4YKL124W YOR385WQ08909 290 aa3.55□□□□□ -1.84
SSH4YKL124W YLR122CQ12312 125 aa3.55□□□□□ -1.84
SSH4YKL124W YER039C-AP0CD97 72 aa3.54□□□□□ -1.84
SSH4YKL124W UBI4P0CG63 381 aaKnown RBP3.54□□□□□ -1.84
SSH4YKL124W RPL2AP0CX45 254 aaKnown RBP3.54□□□□□ -1.84
SSH4YKL124W RPL2BP0CX46 254 aaKnown RBP3.54□□□□□ -1.84
SSH4YKL124W YHK8P38776 514 aa3.54□□□□□ -1.84
SSH4YKL124W RPL9BP51401 191 aaKnown RBP3.54□□□□□ -1.84
SSH4YKL124W HST4P53688 370 aa3.54□□□□□ -1.84
SSH4YKL124W YML018CQ03730 393 aa3.54□□□□□ -1.84
SSH4YKL124W TVP18Q04767 167 aa3.54□□□□□ -1.84
SSH4YKL124W BOL1Q3E793 110 aa3.54□□□□□ -1.84
SSH4YKL124W RPL9AP05738 191 aaKnown RBP3.53□□□□□ -1.84
SSH4YKL124W MDM10P18409 493 aa3.53□□□□□ -1.84
SSH4YKL124W ROX3P25046 220 aa3.53□□□□□ -1.84
SSH4YKL124W YPC1P38298 316 aa3.53□□□□□ -1.84
SSH4YKL124W PEX7P39108 375 aa3.53□□□□□ -1.84
SSH4YKL124W GTT1P40582 234 aa3.53□□□□□ -1.84
SSH4YKL124W MCM22P47167 239 aa3.53□□□□□ -1.84
SSH4YKL124W PHO23P50947 330 aa3.53□□□□□ -1.84
SSH4YKL124W YGR151CP53287 111 aa3.53□□□□□ -1.84
SSH4YKL124W GPI15P53961 229 aa3.53□□□□□ -1.84
SSH4YKL124W SYM1Q06563 197 aa3.53□□□□□ -1.84
SSH4YKL124W YOL029CQ08187 201 aa3.53□□□□□ -1.84
SSH4YKL124W FCY1Q12178 158 aa3.53□□□□□ -1.84
SSH4YKL124W YBL112CQ3E7Y4 105 aa3.53□□□□□ -1.84
SSH4YKL124W YPL229WQ99395 206 aa3.53□□□□□ -1.84
SSH4YKL124W RPS2P25443 254 aaKnown RBP3.53□□□□□ -1.85
SSH4YKL124W HPA3P39979 161 aa3.53□□□□□ -1.85
SSH4YKL124W YEA4P40004 342 aa3.53□□□□□ -1.85
SSH4YKL124W YIA6P40556 373 aa3.53□□□□□ -1.85
SSH4YKL124W FIP1P45976 327 aa3.53□□□□□ -1.85
SSH4YKL124W YGR219WP53307 113 aa3.53□□□□□ -1.85
SSH4YKL124W COF1Q03048 143 aaKnown RBP3.53□□□□□ -1.85
SSH4YKL124W YDR415CQ04033 374 aaPredicted RBP3.53□□□□□ -1.85
SSH4YKL124W IZH3Q07959 543 aa3.53□□□□□ -1.85
SSH4YKL124W YOS1Q3E834 85 aa3.53□□□□□ -1.85
SSH4YKL124W CYC1P00044 109 aaPredicted RBP3.52□□□□□ -1.85
SSH4YKL124W SPT14P32363 452 aa3.52□□□□□ -1.85
SSH4YKL124W RNP1P32385 249 aa3.52□□□□□ -1.85
SSH4YKL124W SPT4P32914 102 aaPredicted RBP3.52□□□□□ -1.85
SSH4YKL124W LAG1P38703 411 aa3.52□□□□□ -1.85
SSH4YKL124W YHR138CP38841 114 aaPredicted RBP3.52□□□□□ -1.85
SSH4YKL124W KEG1P43614 200 aa3.52□□□□□ -1.85
SSH4YKL124W LCB3P47013 409 aa3.52□□□□□ -1.85
SSH4YKL124W VPS55P47111 140 aa3.52□□□□□ -1.85
SSH4YKL124W AIM25P47140 327 aa3.52□□□□□ -1.85
SSH4YKL124W ERG25P53045 309 aa3.52□□□□□ -1.85
SSH4YKL124W HOR7Q05827 59 aa3.52□□□□□ -1.85
SSH4YKL124W ERV2Q12284 196 aa3.52□□□□□ -1.85
SSH4YKL124W JID1Q12350 301 aa3.52□□□□□ -1.85
SSH4YKL124W YLR118CQ12354 227 aa3.52□□□□□ -1.85
SSH4YKL124W MAG1P22134 296 aaKnown RBP3.51□□□□□ -1.85
SSH4YKL124W YJL213WP40896 331 aa3.51□□□□□ -1.85
SSH4YKL124W YPS5P53057 165 aa3.51□□□□□ -1.85
SSH4YKL124W GTF1P53260 183 aaPredicted RBP3.51□□□□□ -1.85
SSH4YKL124W ATP23P53722 227 aa3.51□□□□□ -1.85
SSH4YKL124W LAS17Q12446 633 aa3.51□□□□□ -1.85
SSH4YKL124W YCR075W-AQ3E830 75 aa3.51□□□□□ -1.85
SSH4YKL124W HUG1Q6Q5K6 68 aa3.51□□□□□ -1.85
SSH4YKL124W CYC7P00045 113 aa3.5□□□□□ -1.85
SSH4YKL124W MRP2P10663 115 aaPredicted RBP3.5□□□□□ -1.85
SSH4YKL124W RPL16BP26785 198 aaKnown RBP3.5□□□□□ -1.85
SSH4YKL124W SCM4P32564 187 aa3.5□□□□□ -1.85
SSH4YKL124W YPT10P38146 199 aa3.5□□□□□ -1.85
SSH4YKL124W MST28P39552 234 aa3.5□□□□□ -1.85
SSH4YKL124W MIT1P40002 666 aa3.5□□□□□ -1.85
SSH4YKL124W SIM1P40472 476 aa3.5□□□□□ -1.85
SSH4YKL124W LSM7P53905 115 aaKnown RBP3.5□□□□□ -1.85
SSH4YKL124W THI74Q04083 370 aa3.5□□□□□ -1.85
SSH4YKL124W ERP1Q05359 219 aaKnown RBP3.5□□□□□ -1.85
SSH4YKL124W YDL085C-AQ3E7B7 68 aaKnown RBP3.5□□□□□ -1.85
SSH4YKL124W SEC4P07560 215 aaKnown RBP3.5□□□□□ -1.85
SSH4YKL124W SPS2P08459 502 aa3.5□□□□□ -1.85
SSH4YKL124W PBI2P0CT04 75 aaKnown RBP3.5□□□□□ -1.85
SSH4YKL124W POP8P38208 133 aa3.5□□□□□ -1.85
SSH4YKL124W VPS71Q03433 280 aa3.5□□□□□ -1.85
SSH4YKL124W LOA1Q06508 300 aa3.5□□□□□ -1.85
SSH4YKL124W FMP49A0A023PZB3 126 aa3.49□□□□□ -1.85
SSH4YKL124W ADH1P00330 348 aaKnown RBP3.49□□□□□ -1.85
SSH4YKL124W TIP1P27654 210 aaPredicted RBP3.49□□□□□ -1.85
SSH4YKL124W MIG1P27705 504 aa3.49□□□□□ -1.85
SSH4YKL124W UTR5P32630 166 aa3.49□□□□□ -1.85
SSH4YKL124W YKR045CP36138 183 aa3.49□□□□□ -1.85
SSH4YKL124W GEP4P38812 185 aa3.49□□□□□ -1.85
SSH4YKL124W YEA6P39953 335 aa3.49□□□□□ -1.85
SSH4YKL124W WWM1P43582 211 aaKnown RBP3.49□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms