RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TAF12Q16514 161 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 SNRNP35Q16560 246 aaKnown RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 KNOP1Q1ED39 458 aaKnown RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 SLC5A9Q2M3M2 681 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 MGAT5BQ3V5L5 792 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 SLC44A4Q53GD3 710 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 PARM1Q6UWI2 310 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 NPAS3Q8IXF0 933 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 DCP1BQ8IZD4 617 aaKnown RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 HS6ST3Q8IZP7 471 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 CELF5Q8N6W0 485 aaKnown RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 ATAD1Q8NBU5 361 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 OR10T2Q8NGX3 314 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 CCDC34Q96HJ3 373 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 KXD1Q9BQD3 176 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 LTB4R2Q9NPC1 389 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 PRMT8Q9NR22 394 aaPredicted RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 INTS13Q9NVM9 706 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 MRPS17Q9Y2R5 130 aaKnown RBP12.5□□□□□ -0.41
CLN3-257ENST00000637110 SNX9Q9Y5X1 595 aa12.5□□□□□ -0.41
CLN3-257ENST00000637110 A0A1W2PQ27 194 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 A0A1W2PQ64 194 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 A0A1W2PQD8 194 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 MTMR11A4FU01 709 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 TGFB1I1O43294 461 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 KLRC4O43908 158 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 PHACTR2O75167 634 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 SOAT2O75908 522 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 RPN1P04843 607 aaKnown RBP12.49□□□□□ -0.41
CLN3-257ENST00000637110 MYL1P05976 194 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 GJA1P17302 382 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 CEBPBP17676 345 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 MYL7Q01449 175 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 TSPY1Q01534 308 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 EHHADHQ08426 723 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 STK4Q13043 487 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 VEPH1Q14D04 833 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 IL31Q6EBC2 164 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 CENPPQ6IPU0 288 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 LRRC52Q8N7C0 313 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 LEMD2Q8NC56 503 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 OR5B17Q8NGF7 314 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 GOLGA5Q8TBA6 731 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 FGF14Q92915 247 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 CLDN23Q96B33 292 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 HPDLQ96IR7 371 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 RPP25Q9BUL9 199 aaKnown RBP12.49□□□□□ -0.41
CLN3-257ENST00000637110 ZCWPW1Q9H0M4 648 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 SLITRK6Q9H5Y7 841 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 DDX43Q9NXZ2 648 aaKnown RBP12.49□□□□□ -0.41
CLN3-257ENST00000637110 ABI2Q9NYB9 513 aaPredicted RBP12.49□□□□□ -0.41
CLN3-257ENST00000637110 CEP72Q9P209 647 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 CGNQ9P2M7 1197 aaKnown RBP12.49□□□□□ -0.41
CLN3-257ENST00000637110 HPSEQ9Y251 543 aa12.49□□□□□ -0.41
CLN3-257ENST00000637110 MTF2Q9Y483 593 aaPredicted RBP12.49□□□□□ -0.41
CLN3-257ENST00000637110 PRPF40AO75400 957 aaKnown RBP12.48□□□□□ -0.41
CLN3-257ENST00000637110 ZNF202O95125 648 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 KIF20AO95235 890 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 PROS1P07225 676 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 PRR29P0C7W0 189 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 ACAT1P24752 427 aaKnown RBP12.48□□□□□ -0.41
CLN3-257ENST00000637110 PMLP29590 882 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 TUFMP49411 452 aaKnown RBP12.48□□□□□ -0.41
CLN3-257ENST00000637110 CYP24A1Q07973 514 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 TRPC3Q13507 836 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 CSRP2Q16527 193 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 BMT2Q1RMZ1 405 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 TSSK4Q6SA08 328 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 KRBA2Q6ZNG9 492 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 PRR23CQ6ZRP0 262 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 WDR49Q8IV35 697 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 PDCL2Q8N4E4 241 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 KIAA0895Q8NCT3 520 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 TCEAL4Q96EI5 215 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 MMS19Q96T76 1030 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 CRISPLD1Q9H336 500 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 SEMA4GQ9NTN9 838 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 GDE1Q9NZC3 331 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 L1RE1Q9UN81 338 aa12.48□□□□□ -0.41
CLN3-257ENST00000637110 PTPRJQ12913 1337 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 VNN2O95498 520 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 SMARCB1Q12824 385 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 BIRC3Q13489 604 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 PSMD6Q15008 389 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 LPAL2Q16609 132 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 PRSS36Q5K4E3 855 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 CEP135Q66GS9 1140 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 SCARA3Q6AZY7 606 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 ZNF852Q6ZMS4 543 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 PRR23BQ6ZRT6 265 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 TPRG1Q6ZUI0 275 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 TRAPPC11Q7Z392 1133 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 DNAJB7Q7Z6W7 309 aaPredicted RBP12.47□□□□□ -0.41
CLN3-257ENST00000637110 ITIH5Q86UX2 942 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 LRRTM3Q86VH5 581 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 ADGRF2Q8IZF7 708 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 TMEM86AQ8N2M4 240 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 TTC9BQ8N6N2 239 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 SPPL2BQ8TCT7 592 aa12.47□□□□□ -0.41
CLN3-257ENST00000637110 GIPC2Q8TF65 315 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms