RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 USP13Q92995 863 aaPredicted RBP17.39■□□□□ 0.37
CLN3-246ENST00000636228 ZNF560Q96MR9 790 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 EBF3Q9H4W6 596 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 THG1LQ9NWX6 298 aaKnown RBP17.39■□□□□ 0.37
CLN3-246ENST00000636228 RBAKQ9NYW8 714 aaPredicted RBP17.39■□□□□ 0.37
CLN3-246ENST00000636228 SEL1LQ9UBV2 794 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.39■□□□□ 0.37
CLN3-246ENST00000636228 F5P12259 2224 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 OTOL1A6NHN0 477 aaPredicted RBP17.38■□□□□ 0.37
CLN3-246ENST00000636228 EXTL3O43909 919 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 PRPF6O94906 941 aaKnown RBP17.38■□□□□ 0.37
CLN3-246ENST00000636228 KRT19P08727 400 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 GAP43P17677 238 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 CYP2F1P24903 491 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 WEE1P30291 646 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 AVPR1AP37288 418 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 TXLNAP40222 546 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 PXNP49023 591 aaPredicted RBP17.38■□□□□ 0.37
CLN3-246ENST00000636228 PLCB2Q00722 1185 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 TSPY1Q01534 308 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 LMNB2Q03252 620 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 SMARCB1Q12824 385 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 CCINQ13939 588 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 ITPRIPL2Q3MIP1 535 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 LAIR1Q6GTX8 287 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 C1orf228Q6PIY5 440 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 OSTM1Q86WC4 334 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 NT5DC4Q86YG4 428 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 PDILTQ8N807 584 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 GLIS3Q8NEA6 775 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 TTC16Q8NEE8 873 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 FAM83CQ9BQN1 747 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 PDE11AQ9HCR9 933 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 HPS4Q9NQG7 708 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 PANK4Q9NVE7 773 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 POLR3BQ9NW08 1133 aaPredicted RBP17.38■□□□□ 0.37
CLN3-246ENST00000636228 DDX43Q9NXZ2 648 aaKnown RBP17.38■□□□□ 0.37
CLN3-246ENST00000636228 GTF3C4Q9UKN8 822 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 CDV3Q9UKY7 258 aaKnown RBP17.38■□□□□ 0.37
CLN3-246ENST00000636228 PCDHB13Q9Y5F0 798 aa17.38■□□□□ 0.37
CLN3-246ENST00000636228 CACNA1AO00555 2505 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 PRR5-ARHGAP8B1AHC4 643 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 HUS1O60921 280 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 ARSAP15289 507 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 PDCP20941 246 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 PNPLA4P41247 253 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 STAT6P42226 847 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 ARHGAP8P85298 464 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 NAIF1Q69YI7 327 aaPredicted RBP17.37■□□□□ 0.37
CLN3-246ENST00000636228 LONP2Q86WA8 852 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 CXorf38Q8TB03 319 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 HPS3Q969F9 1004 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 CHFRQ96EP1 664 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 USP28Q96RU2 1077 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 CYP2S1Q96SQ9 504 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 TDP1Q9NUW8 608 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 SIX4Q9UIU6 781 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 SNX9Q9Y5X1 595 aa17.37■□□□□ 0.37
CLN3-246ENST00000636228 LDHAP00338 332 aaKnown RBP17.36■□□□□ 0.37
CLN3-246ENST00000636228 RETP07949 1114 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 GARTP22102 1010 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 RUNX3Q13761 415 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 CCDC73Q6ZRK6 1079 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 CACTINQ8WUQ7 758 aaKnown RBP17.36■□□□□ 0.37
CLN3-246ENST00000636228 PKMYT1Q99640 499 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 ACBD6Q9BR61 282 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 MTMR12Q9C0I1 747 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 FBRSL1Q9HCM7 1045 aaKnown RBP17.36■□□□□ 0.37
CLN3-246ENST00000636228 TRPC7Q9HCX4 862 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 OLFML3Q9NRN5 406 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 SEMA4GQ9NTN9 838 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 SCN1AP35498 2009 aa17.36■□□□□ 0.37
CLN3-246ENST00000636228 TSC2P49815 1807 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 FRMD3A2A2Y4 597 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 ATP2C2O75185 946 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 TADA3O75528 432 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 PAPSS2O95340 614 aaPredicted RBP17.35■□□□□ 0.37
CLN3-246ENST00000636228 CSH1P0DML2 217 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 CSH2P0DML3 217 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 RBP5P82980 135 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 SLC39A14Q15043 492 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 NFE2Q16621 373 aaPredicted RBP17.35■□□□□ 0.37
CLN3-246ENST00000636228 INTS6LQ5JSJ4 861 aaKnown RBP17.35■□□□□ 0.37
CLN3-246ENST00000636228 FSTL4Q6MZW2 842 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 CEP68Q76N32 757 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.35■□□□□ 0.37
CLN3-246ENST00000636228 MON1AQ86VX9 555 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 MRPS31Q92665 395 aaKnown RBP17.35■□□□□ 0.37
CLN3-246ENST00000636228 SLC22A12Q96S37 553 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 ITGA11Q9UKX5 1188 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 MTMR6Q9Y217 621 aa17.35■□□□□ 0.37
CLN3-246ENST00000636228 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.34■□□□□ 0.37
CLN3-246ENST00000636228 GDF9O60383 454 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 EGFP01133 1207 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 TMEM191BP0C7N4 346 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 SDHBP21912 280 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 MYL7Q01449 175 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 PTPRJQ12913 1337 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 SOWAHAQ2M3V2 549 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 TMEM196Q5HYL7 178 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms