RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SPARCL1Q14515 664 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 PKN2Q16513 984 aaKnown RBP13.44□□□□□ -0.26
LINC00540-203ENST00000631321 ZC3H12AQ5D1E8 599 aaKnown RBP13.44□□□□□ -0.26
LINC00540-203ENST00000631321 EFHC2Q5JST6 749 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 ECHDC2Q86YB7 292 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 SEPT1Q8WYJ6 367 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 TMEM121Q9BTD3 319 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 PNMA3Q9UL41 463 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 ZMYND8Q9ULU4 1186 aaPredicted RBP13.44□□□□□ -0.26
LINC00540-203ENST00000631321 SNCAIPQ9Y6H5 919 aa13.44□□□□□ -0.26
LINC00540-203ENST00000631321 IGKV6-21A0A0C4DH24 114 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 FZD9O00144 591 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 TYROBPO43914 113 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 B4GALT4O60513 344 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PRKCBP05771 671 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 TGFB3P10600 412 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 EZRP15311 586 aaKnown RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 YWHAEP62258 255 aaKnown RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 TRPC3Q13507 836 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 MXD4Q14582 209 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PDK4Q16654 411 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 ZNF699Q32M78 642 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 CYP4A22Q5TCH4 519 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PRAMEF18Q5VWM3 479 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 DENND1BQ6P3S1 775 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 METTL7BQ6UX53 244 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 LBX2Q6XYB7 198 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 BBS12Q6ZW61 710 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PNMA8AQ86V59 439 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 ZBED8Q8IZ13 594 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 ARFGAP1Q8N6T3 406 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 TTC13Q8NBP0 860 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 KLHL29Q96CT2 875 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 VPS37BQ9H9H4 285 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PTPRHQ9HD43 1115 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PSMC3IPQ9P2W1 217 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 BAIAP2L1Q9UHR4 511 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 FZD1Q9UP38 647 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 SPAG7O75391 227 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 KRT7P08729 469 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 WEE2P0C1S8 567 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 POLR2BP30876 1174 aaKnown RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 GPX6P59796 221 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 LAMTOR4Q0VGL1 99 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 MOGSQ13724 837 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PTPN20Q4JDL3 420 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 ZNF394Q53GI3 561 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 TSHZ1Q6ZSZ6 1077 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 CEP57Q86XR8 500 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 PPIL6Q8IXY8 311 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 ACSF2Q96CM8 615 aaPredicted RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 HAUS1Q96CS2 278 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 FAXDC2Q96IV6 333 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 SMC6Q96SB8 1091 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 TCHPQ9BT92 498 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 C2orf40Q9H1Z8 148 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 GEMIN8Q9NWZ8 242 aaKnown RBP13.43□□□□□ -0.26
LINC00540-203ENST00000631321 CLUHO75153 1309 aa13.43□□□□□ -0.26
LINC00540-203ENST00000631321 SOWAHBA6NEL2 793 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 E7ESA3 106 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 POC1B-GALNT4F8VUJ3 575 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 SGK1O00141 431 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 LRCH4O75427 683 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 PSMA2P25787 234 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 RFC1P35251 1148 aaPredicted RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 TCF7P36402 384 aaPredicted RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 YARSP54577 528 aaKnown RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 ADCY1Q08828 1119 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 PDIA2Q13087 525 aaKnown RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 MAPK6Q16659 721 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 HIF1AQ16665 826 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 ANGEL2Q5VTE6 544 aaKnown RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 RIOX2Q8IUF8 465 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 ZBTB8OSQ8IWT0 167 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 EXOC8Q8IYI6 725 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 THNSL1Q8IYQ7 743 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 NAT8LQ8N9F0 302 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 MYCBPQ99417 103 aaPredicted RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 DHRS4Q9BTZ2 278 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 ZBTB42B2RXF5 422 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 SMAPO00193 183 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 LGR5O75473 907 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 UNC5CO95185 931 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 KRT3P12035 628 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 TSHRP16473 764 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 KRT15P19012 456 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 IL1R2P27930 398 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 CTCFP49711 727 aaPredicted RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 OTUD4Q01804 1114 aaKnown RBP13.42□□□□□ -0.26
LINC00540-203ENST00000631321 MPZL3Q6UWV2 235 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 ACTL9Q8TC94 416 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 CPT1BQ92523 772 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 EBF2Q9HAK2 575 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 WDR35Q9P2L0 1181 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 CYTH4Q9UIA0 394 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 RABGEF1Q9UJ41 708 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 GRID1Q9ULK0 1009 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 LTBP3Q9NS15 1303 aa13.42□□□□□ -0.26
LINC00540-203ENST00000631321 MED7O43513 233 aa13.41□□□□□ -0.26
LINC00540-203ENST00000631321 EDF1O60869 148 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms