RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PDE1AP54750 535 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 HOXA4Q00056 320 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-208ENST00000625916 TREML2Q5T2D2 321 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 KRT26Q7Z3Y9 468 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 CHSY1Q86X52 802 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 GALNT16Q8N428 558 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 LRRC71Q8N4P6 559 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 C1orf162Q8NEQ5 155 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-208ENST00000625916 PRSS3P2Q8NHM4 247 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 NSUN6Q8TEA1 469 aaKnown RBP3.88□□□□□ -1.79
SCN1A-208ENST00000625916 COA7Q96BR5 231 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 ASB2Q96Q27 587 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 NELL2Q99435 816 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 PDGFCQ9NRA1 345 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 ZNF580Q9UK33 172 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 AGAP1Q9UPQ3 857 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 CYP2D7A0A087X1C5 515 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 TLDC2A0PJX2 215 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 MYMKA6NI61 221 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 NT5C1B-RDH14C9J2C7 533 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 ONECUT2O95948 504 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 GNAI2P04899 355 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 LIPAP38571 399 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 PIK3CGP48736 1102 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 CYP4F2P78329 520 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 RAPGEF1Q13905 1077 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 LRRC41Q15345 812 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 TRIP6Q15654 476 aaKnown RBP3.87□□□□□ -1.79
SCN1A-208ENST00000625916 UAP1L1Q3KQV9 507 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 ICE2Q659A1 982 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 TMEM108Q6UXF1 575 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 MAVSQ7Z434 540 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 DTX2Q86UW9 622 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 KRT73Q86Y46 540 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 TMEM79Q9BSE2 394 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 C1orf43Q9BWL3 253 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 ADGRE3Q9BY15 652 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 TINAGL1Q9GZM7 467 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-208ENST00000625916 PUS7LQ9H0K6 701 aaKnown RBP3.87□□□□□ -1.79
SCN1A-208ENST00000625916 DUSP22Q9NRW4 184 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 SLC5A4Q9NY91 659 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 MRFAP1Q9Y605 127 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 PHLDB1Q86UU1 1377 aa3.87□□□□□ -1.79
SCN1A-208ENST00000625916 PRSS29PA6NIE9 313 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 M0QYG6 137 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 ADAMTS3O15072 1205 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 CLSTN1O94985 981 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 IL6RP08887 468 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 VIL1P09327 827 aaKnown RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 NPSP0C0P6 89 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 MYBL2P10244 700 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 TOB1P50616 345 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 KRTAP10-6P60371 365 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 GTF2H3Q13889 308 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 KIF22Q14807 665 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 INAVAQ3KP66 663 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 SFRP4Q6FHJ7 346 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 LAYNQ6UX15 382 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 TRIM72Q6ZMU5 477 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 USP37Q86T82 979 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 SAMD14Q8IZD0 417 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 NANOGP1Q8N7R0 232 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 C8orf58Q8NAV2 365 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 C3orf20Q8ND61 904 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 CYP2W1Q8TAV3 490 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 TNPO1Q92973 898 aaKnown RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 FAXDC2Q96IV6 333 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 MACROD1Q9BQ69 325 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 EBF3Q9H4W6 596 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 TRNAU1APQ9NX07 287 aaKnown RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 MCM8Q9UJA3 840 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 SERTAD3Q9UJW9 196 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 CCNL1Q9UK58 526 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 ADAMTS5Q9UNA0 930 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 TMA7Q9Y2S6 64 aaKnown RBP3.86□□□□□ -1.79
SCN1A-208ENST00000625916 CACNA1IQ9P0X4 2223 aa3.86□□□□□ -1.79
SCN1A-208ENST00000625916 LRRC14BA6NHZ5 514 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 SOCS2O14508 198 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PCDHGA12O60330 932 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 FESP07332 822 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 FTH1P19P0C7X4 201 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PRDX5P30044 214 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 TCF15Q12870 199 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 DAZAP2Q15038 168 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 CERKLQ49MI3 558 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 Q4G0T1 1027 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 SDE2Q6IQ49 451 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PARS2Q7L3T8 475 aaKnown RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PPP1R32Q7Z5V6 425 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 CBARPQ8N350 705 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 FAM46DQ8NEK8 389 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 DDX17Q92841 729 aaKnown RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 DAZAP1Q96EP5 407 aaKnown RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 TEKT5Q96M29 485 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 PUS7Q96PZ0 661 aaKnown RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 FAM126AQ9BYI3 521 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-208ENST00000625916 KRTAP2-2Q9BYT5 123 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 TTYH3Q9C0H2 523 aa3.85□□□□□ -1.79
SCN1A-208ENST00000625916 SH2B3Q9UQQ2 575 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms