RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 CFAP97Q9P2B7 532 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 AGAP1Q9UPQ3 857 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 ADGRL2O95490 1459 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 CCDC141Q6ZP82 1450 aa6.45□□□□□ -1.38
VPS29-212ENST00000621131 SAMD9LQ8IVG5 1584 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 ABCC5O15440 1437 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 ARIH2O95376 493 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 CHRM2P08172 466 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 HK3P52790 923 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 TCF15Q12870 199 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 KIF22Q14807 665 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 AKNAD1Q5T1N1 836 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 SMAD5Q99717 465 aaKnown RBP6.44□□□□□ -1.38
VPS29-212ENST00000621131 AMBRA1Q9C0C7 1298 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 KLC4Q9NSK0 619 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS29-212ENST00000621131 ADGRA2Q96PE1 1338 aa6.44□□□□□ -1.38
VPS29-212ENST00000621131 ABCA9Q8IUA7 1624 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 ZNF785A8K8V0 405 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 F5H697 171 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 SLC16A6O15403 523 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 ORC4O43929 436 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 CHEK2O96017 543 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 GNAI3P08754 354 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 POU2F2P09086 479 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 ITPKBP27987 946 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 PHKA1P46020 1223 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 TOB1P50616 345 aaPredicted RBP6.43□□□□□ -1.38
VPS29-212ENST00000621131 GNAI1P63096 354 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 ITIH3Q06033 890 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 FOXF2Q12947 444 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 HNRNPA0Q13151 305 aaKnown RBP6.43□□□□□ -1.38
VPS29-212ENST00000621131 NOGQ13253 232 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 TAF2Q6P1X5 1199 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 USP45Q70EL2 814 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 B3GALNT2Q8NCR0 500 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 OSBPL9Q96SU4 736 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 SMOC2Q9H3U7 446 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 RRP7BPQ9NSQ0 103 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 MAST1Q9Y2H9 1570 aa6.43□□□□□ -1.38
VPS29-212ENST00000621131 PREX1Q8TCU6 1659 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 PTPRTO14522 1441 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 PTPRKQ15262 1439 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 C9orf84Q5VXU9 1444 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 SYCP2Q9BX26 1530 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 A0A0B4J269 797 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 SNUPNO95149 360 aaKnown RBP6.42□□□□□ -1.38
VPS29-212ENST00000621131 PIK3CGP48736 1102 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 ZNF135P52742 658 aaPredicted RBP6.42□□□□□ -1.38
VPS29-212ENST00000621131 PROK1P58294 105 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 TUBB3Q13509 450 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 BRDTQ58F21 947 aaPredicted RBP6.42□□□□□ -1.38
VPS29-212ENST00000621131 TMEM240Q5SV17 173 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 THEMIS2Q5TEJ8 643 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 CPA6Q8N4T0 437 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 SARAFQ96BY9 339 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 MRPL46Q9H2W6 279 aaKnown RBP6.42□□□□□ -1.38
VPS29-212ENST00000621131 WDCPQ9H6R7 721 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 CPNE5Q9HCH3 593 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 ZDHHC8Q9ULC8 765 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 PLXNC1O60486 1568 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 PLCH2O75038 1416 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 KIAA1107Q9UPP5 1409 aa6.42□□□□□ -1.38
VPS29-212ENST00000621131 ABCC1P33527 1531 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 LINC00473A8K010 186 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 TRIAP1O43715 76 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 RARBP10826 455 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 NDUFV1P49821 464 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 SOX10P56693 466 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 TSTD2Q5T7W7 516 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 ZNF788Q6ZQV5 615 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 HEATR3Q7Z4Q2 680 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 USP37Q86T82 979 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 SRRM1Q8IYB3 904 aaKnown RBP6.41□□□□□ -1.38
VPS29-212ENST00000621131 SH2D3CQ8N5H7 860 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 PSD4Q8NDX1 1056 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 ANKS1AQ92625 1134 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 RFKQ969G6 155 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 CNPPD1Q9BV87 410 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 SLAMF7Q9NQ25 335 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 HOMER2Q9NSB8 354 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 ZNF644Q9H582 1327 aaPredicted RBP6.41□□□□□ -1.38
VPS29-212ENST00000621131 CD109Q6YHK3 1445 aa6.41□□□□□ -1.38
VPS29-212ENST00000621131 FNDC1Q4ZHG4 1894 aaPredicted RBP6.41□□□□□ -1.38
VPS29-212ENST00000621131 ARHGEF40Q8TER5 1519 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 KIF20AO95235 890 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 LMO1P25800 156 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 MAP2K6P52564 334 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 PPP1R32Q7Z5V6 425 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 FAM109AQ8N4B1 249 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 RGMAQ96B86 450 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 ABCF2Q9UG63 623 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 ADAM21Q9UKJ8 722 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 ST3GAL5Q9UNP4 418 aa6.4□□□□□ -1.38
VPS29-212ENST00000621131 TONSLQ96HA7 1378 aa6.4□□□□□ -1.39
VPS29-212ENST00000621131 NCOA1Q15788 1441 aa6.4□□□□□ -1.39
VPS29-212ENST00000621131 COL3A1P02461 1466 aaPredicted RBP6.4□□□□□ -1.39
VPS29-212ENST00000621131 FRMPD1Q5SYB0 1578 aa6.4□□□□□ -1.39
VPS29-212ENST00000621131 WIPF3A6NGB9 483 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 CGB1A6NKQ9 187 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms