RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GLYCTKQ8IVS8 523 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 HS6ST3Q8IZP7 471 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 ELOVL4Q9GZR5 314 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 TLE6Q9H808 572 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 DNAJC12Q9UKB3 198 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 CNTN6Q9UQ52 1028 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 PLXNA3P51805 1871 aa21.02■□□□□ 0.96
UPF3A-211ENST00000618700 PER2O15055 1255 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 ATP2C2O75185 946 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 ABLIM3O94929 683 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 CPB1P15086 417 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 KLRC2P26717 231 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 PSMC1P62191 440 aaKnown RBP21.01■□□□□ 0.95
UPF3A-211ENST00000618700 KCNC3Q14003 757 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 CCDC142Q17RM4 750 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 FAM171BQ6P995 826 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 PPFIBP1Q86W92 1011 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 CRYBG2Q8N1P7 616 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 B3GALNT2Q8NCR0 500 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 NEK11Q8NG66 645 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 SLC22A17Q8WUG5 538 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 SHC3Q92529 594 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 NT5C1AQ9BXI3 368 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 GPR88Q9GZN0 384 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 CRTAC1Q9NQ79 661 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 TMLHEQ9NVH6 421 aa21.01■□□□□ 0.95
UPF3A-211ENST00000618700 FSD2A1L4K1 749 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 MYBPHLA2RUH7 354 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 TGM5O43548 720 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 VNN2O95498 520 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 TPM3P06753 285 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 FOSL2P15408 326 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 GTF2F1P35269 517 aaKnown RBP eCLIP21■□□□□ 0.952e-6■■■■□ 26
UPF3A-211ENST00000618700 ZNF132P52740 706 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 RAD23BP54727 409 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 ARPP19P56211 112 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 SMARCB1Q12824 385 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 ORC1Q13415 861 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 COL19A1Q14993 1142 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 SLC39A12Q504Y0 691 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 TPGS2Q68CL5 300 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 DCP1BQ8IZD4 617 aaKnown RBP21■□□□□ 0.95
UPF3A-211ENST00000618700 SLC4A11Q8NBS3 891 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 ZNF461Q8TAF7 563 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 TNIP3Q96KP6 325 aa21■□□□□ 0.95
UPF3A-211ENST00000618700 PCMTD1Q96MG8 357 aaPredicted RBP21■□□□□ 0.95
UPF3A-211ENST00000618700 AFF4Q9UHB7 1163 aaKnown RBP21■□□□□ 0.95
UPF3A-211ENST00000618700 MTMR11A4FU01 709 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 GLUD1P00367 558 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 PTPN1P18031 435 aaKnown RBP20.99■□□□□ 0.95
UPF3A-211ENST00000618700 POLR2FP61218 127 aaKnown RBP20.99■□□□□ 0.95
UPF3A-211ENST00000618700 ARHGAP44Q17R89 818 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 TMEM270Q6UE05 265 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 RNF19BQ6ZMZ0 732 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 ACOT1Q86TX2 421 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 PALB2Q86YC2 1186 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 EFHBQ8N7U6 833 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 RBBP8NLQ8NC74 664 aaPredicted RBP20.99■□□□□ 0.95
UPF3A-211ENST00000618700 VN1R2Q8NFZ6 395 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 MYCBPAPQ8TBZ2 947 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 TTYH3Q9C0H2 523 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 FBXW11Q9UKB1 542 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 GTF3C4Q9UKN8 822 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 PCDHB4Q9Y5E5 795 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 HCFC2Q9Y5Z7 792 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 ITIH6Q6UXX5 1313 aa20.99■□□□□ 0.95
UPF3A-211ENST00000618700 GLP2RO95838 553 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 ATF2P15336 505 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 JAM2P57087 298 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 PLCB2Q00722 1185 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 RAPGEF1Q13905 1077 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 DRAP1Q14919 205 aaPredicted RBP20.98■□□□□ 0.95
UPF3A-211ENST00000618700 MAPRE1Q15691 268 aaKnown RBP20.98■□□□□ 0.95
UPF3A-211ENST00000618700 NFE2Q16621 373 aaPredicted RBP20.98■□□□□ 0.95
UPF3A-211ENST00000618700 ZNF394Q53GI3 561 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 FIGNQ5HY92 759 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 MDH1BQ5I0G3 518 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 PDCD7Q8N8D1 485 aaKnown RBP20.98■□□□□ 0.95
UPF3A-211ENST00000618700 TMEM176AQ96HP8 235 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 LPIN3Q9BQK8 851 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 STK33Q9BYT3 514 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 CEP72Q9P209 647 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 MAFFQ9ULX9 164 aa20.98■□□□□ 0.95
UPF3A-211ENST00000618700 F8VZ95 297 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 RNF225M0QZC1 329 aaPredicted RBP20.97■□□□□ 0.95
UPF3A-211ENST00000618700 PAEPP09466 180 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 EPCAMP16422 314 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 C2orf15Q8WU43 125 aaKnown RBP20.97■□□□□ 0.95
UPF3A-211ENST00000618700 MYLPFQ96A32 169 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 PCED1BQ96HM7 432 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 PGLYRP2Q96PD5 576 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 TRIM5Q9C035 493 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 CRISPLD1Q9H336 500 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 ABCB6Q9NP58 842 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 PTPRDP23468 1912 aa20.97■□□□□ 0.95
UPF3A-211ENST00000618700 FOXN3O00409 490 aaPredicted RBP20.96■□□□□ 0.95
UPF3A-211ENST00000618700 PNMA6AP0CW24 399 aaPredicted RBP20.96■□□□□ 0.95
UPF3A-211ENST00000618700 KRT5P13647 590 aa20.96■□□□□ 0.95
UPF3A-211ENST00000618700 TRIM21P19474 475 aaKnown RBP20.96■□□□□ 0.95
UPF3A-211ENST00000618700 RBM10P98175 930 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms