RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 BCAR1P56945 870 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 BNIP1Q12981 228 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 THOC5Q13769 683 aaKnown RBP13.16□□□□□ -0.3
MSH6-213ENST00000614496 NFIL3Q16649 462 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 ANO5Q75V66 913 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 TTC16Q8NEE8 873 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 UBA3Q8TBC4 463 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 AVENQ9NQS1 362 aaPredicted RBP13.16□□□□□ -0.3
MSH6-213ENST00000614496 HESX1Q9UBX0 185 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 MYH1P12882 1939 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 MYH4Q9Y623 1939 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 A0A1B0GUL6 1792 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 A6NJR5 290 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 CAPN9O14815 690 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 VCPP55072 806 aaKnown RBP13.16□□□□□ -0.3
MSH6-213ENST00000614496 DCAF15Q66K64 600 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 ATG16L1Q676U5 607 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 AGR3Q8TD06 166 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 MPHOSPH6Q99547 160 aaKnown RBP13.16□□□□□ -0.3
MSH6-213ENST00000614496 APOL6Q9BWW8 343 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 MIS12Q9H081 205 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 PXMP2Q9NR77 195 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 PCMTD2Q9NV79 361 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 COL4A1P02462 1669 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 ADSSP30520 456 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 RAP1GAPP47736 663 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 NOVP48745 357 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 MORF4L2Q15014 288 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 EFTUD2Q15029 972 aaKnown RBP eCLIP13.16□□□□□ -0.32e-7■■■□□ 17.5
MSH6-213ENST00000614496 CIAPIN1Q6FI81 312 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 CRELD2Q6UXH1 353 aaPredicted RBP13.16□□□□□ -0.3
MSH6-213ENST00000614496 SESTD1Q86VW0 696 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 TTC8Q8TAM2 541 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 SEC14L1Q92503 715 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 NSL1Q96IY1 281 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 SLC12A4Q9UP95 1085 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 ANKRD36CQ5JPF3 1778 aa13.16□□□□□ -0.3
MSH6-213ENST00000614496 IRS2Q9Y4H2 1338 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 CLGNO14967 610 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 MYL2P10916 166 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 PYGBP11216 843 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 MRPS9P82933 396 aaKnown RBP13.15□□□□□ -0.3
MSH6-213ENST00000614496 MPP2Q14168 576 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 TDRD10Q5VZ19 366 aaKnown RBP13.15□□□□□ -0.3
MSH6-213ENST00000614496 NXNQ6DKJ4 435 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 LMO3Q8TAP4 145 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 ZC3H7BQ9UGR2 993 aaKnown RBP13.15□□□□□ -0.3
MSH6-213ENST00000614496 MROH7Q68CQ1 1323 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 CCNE2O96020 404 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 UBTFL6P0CB48 400 aaPredicted RBP13.15□□□□□ -0.3
MSH6-213ENST00000614496 SERPINB3P29508 390 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 DSG3P32926 999 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 SLC1A5Q15758 541 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 GADL1Q6ZQY3 521 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 TRABD2AQ86V40 505 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 TRIM42Q8IWZ5 723 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 ZBTB10Q96DT7 871 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 ATXN7L3BQ96GX2 97 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 TMEM109Q9BVC6 243 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 MRPL4Q9BYD3 311 aaKnown RBP13.15□□□□□ -0.3
MSH6-213ENST00000614496 KLC2Q9H0B6 622 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 CISHQ9NSE2 258 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 ASNSD1Q9NWL6 643 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 BCORQ6W2J9 1755 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 CFHP08603 1231 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 BMPR2Q13873 1038 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 TFDP2Q14188 446 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 PSMD6Q15008 389 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 MROH9Q5TGP6 573 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 BZW1Q7L1Q6 419 aaKnown RBP13.15□□□□□ -0.3
MSH6-213ENST00000614496 TRIM50Q86XT4 487 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 OR5B17Q8NGF7 314 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 ADAM7Q9H2U9 754 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 ANGPTL2Q9UKU9 493 aa13.15□□□□□ -0.3
MSH6-213ENST00000614496 LRP5O75197 1615 aa13.15□□□□□ -0.31
MSH6-213ENST00000614496 LIASO43766 372 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 ZC3H11AO75152 810 aaKnown RBP eCLIP13.14□□□□□ -0.31
MSH6-213ENST00000614496 KRT38O76015 456 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 PDGFRAP16234 1089 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 GSCP56915 257 aaPredicted RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 RBBP5Q15291 538 aaKnown RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 KATNAL2Q8IYT4 538 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 PSPC1Q8WXF1 523 aaKnown RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 LPAR1Q92633 364 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 TMEM120AQ9BXJ8 343 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 NIF3L1Q9GZT8 377 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 GPATCH2LQ9NWQ4 482 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 AKT3Q9Y243 479 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 NUB1Q9Y5A7 615 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 SLC8A3P57103 927 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 LRRN4Q8WUT4 740 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 DDX27Q96GQ7 796 aaKnown RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 EPB41L4BQ9H329 900 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 SMYD2Q9NRG4 433 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 FZD1Q9UP38 647 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 UMODL1Q5DID0 1318 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 STK10O94804 968 aaKnown RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 PRKCBP05771 671 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 PTPN4P29074 926 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms