RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PCDHB5Q9Y5E4 795 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 TICRRQ7Z2Z1 1910 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 IGSF10Q6WRI0 2623 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 COL4A2P08572 1712 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 ZFHX4Q86UP3 3567 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 A0A0B4J269 797 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 LACTBL1A8MY62 500 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 TM4SF5O14894 197 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 KHNYNO15037 678 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 TBCAO75347 108 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 FAM13AO94988 1023 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 IL18RAPO95256 599 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 LARGE1O95461 756 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 CAVIN2O95810 425 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 KRT18P05783 430 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 USP17L7P0C7H9 530 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 PLA2G4BP0C869 781 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 CEACAM1P13688 526 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 CSRP1P21291 193 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 IFNAR2P48551 515 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 FOSBP53539 338 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 MYL7Q01449 175 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 LMAN2Q12907 356 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 ZRSR1Q15695 479 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 ENOX2Q16206 610 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 PLK5Q496M5 336 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 HSF5Q4G112 596 aaPredicted RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 PREPLQ4J6C6 727 aaPredicted RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 SLC39A12Q504Y0 691 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 SPDYCQ5MJ68 293 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 C9orf57Q5W0N0 161 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 POTEHQ6S545 545 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 RABEPKQ7Z6M1 372 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 TMEM86AQ8N2M4 240 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 C4orf32Q8N8J7 132 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 TSTD1Q8NFU3 115 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 LEO1Q8WVC0 666 aaPredicted RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 TRMT2BQ96GJ1 504 aaKnown RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 ZBTB45Q96K62 511 aaPredicted RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 MKNK1Q9BUB5 465 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 MSTO1Q9BUK6 570 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 EDEM2Q9BV94 578 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 FAM117AQ9C073 453 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 ZCWPW1Q9H0M4 648 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 SLC32A1Q9H598 525 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 TMEM9BQ9NQ34 198 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 TBX20Q9UMR3 447 aa6.79□□□□□ -1.32
CUX1-220ENST00000607092 TIMM13Q9Y5L4 95 aaPredicted RBP6.79□□□□□ -1.32
CUX1-220ENST00000607092 TRIP11Q15643 1979 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 TRAV19A0A0A6YYK7 116 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 ANO9A1A5B4 782 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 BCLAF3A2AJT9 711 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 H0Y626 953 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 K7ENM7 598 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 PIRO00625 290 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 CYB561D2O14569 222 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 SLC9A3R1O14745 358 aaPredicted RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 EXTL3O43909 919 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 TRAK2O60296 914 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 HUS1O60921 280 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 RNF40O75150 1001 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 TRIM16O95361 564 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 PRAMEF12O95522 483 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 NFATC1O95644 943 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 LDHAP00338 332 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 CKMP06732 381 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 OR4Q2P0C623 313 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 HAPLN1P10915 354 aaPredicted RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 TCF3P15923 654 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 IGFBP6P24592 240 aaPredicted RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 PCSK1P29120 753 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 GBP1P32455 592 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 HOXD12P35452 270 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 UBA7P41226 1012 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 PPP3CCP48454 512 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 NOVA1P51513 510 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 DGKEP52429 567 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 CREB5Q02930 508 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 FAM160A1Q05DH4 1040 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 SRSF5Q13243 272 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 HNRNPDQ14103 355 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 KCNB1Q14721 858 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 MTF1Q14872 753 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 SF3A2Q15428 464 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 MAPRE1Q15691 268 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 STXBP5Q5T5C0 1151 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 PSAPL1Q6NUJ1 521 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 TMEM92Q6UXU6 159 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 C4orf50Q6ZRC1 276 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 NUDT18Q6ZVK8 323 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 KBTBD6Q86V97 674 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 CCDC83Q8IWF9 413 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 MYCT1Q8N699 235 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 RASSF8Q8NHQ8 419 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 CACTINQ8WUQ7 758 aaKnown RBP6.78□□□□□ -1.32
CUX1-220ENST00000607092 CD101Q93033 1021 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 HVCN1Q96D96 273 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 RSPRY1Q96DX4 576 aa6.78□□□□□ -1.32
CUX1-220ENST00000607092 FUBP3Q96I24 572 aaKnown RBP eCLIP6.78□□□□□ -1.32
CUX1-220ENST00000607092 ZFYVE19Q96K21 471 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms