RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 ATXN3LQ9H3M9 355 aa13.18□□□□□ -0.3
CTSA-210ENST00000606000 DPEP3Q9H4B8 488 aa13.18□□□□□ -0.3
CTSA-210ENST00000606000 SLITRK6Q9H5Y7 841 aa13.18□□□□□ -0.3
CTSA-210ENST00000606000 CRTAC1Q9NQ79 661 aa13.18□□□□□ -0.3
CTSA-210ENST00000606000 HSFX1Q9UBD0 423 aa13.18□□□□□ -0.3
CTSA-210ENST00000606000 R3HCC1Q9Y3T6 440 aaKnown RBP13.18□□□□□ -0.3
CTSA-210ENST00000606000 PCDHB5Q9Y5E4 795 aa13.18□□□□□ -0.3
CTSA-210ENST00000606000 DENND4CQ5VZ89 1909 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 STK25O00506 426 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 VNN1O95497 513 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 PDGFRBP09619 1106 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 WARSP23381 471 aaKnown RBP13.17□□□□□ -0.3
CTSA-210ENST00000606000 RAP1GAPP47736 663 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 TUFMP49411 452 aaKnown RBP13.17□□□□□ -0.3
CTSA-210ENST00000606000 CLCN5P51795 746 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 BIRC3Q13489 604 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 KCNB1Q14721 858 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 VEPH1Q14D04 833 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 DDR2Q16832 855 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 WDR72Q3MJ13 1102 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 C1orf220Q5T0J3 134 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 LEMD2Q8NC56 503 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 C2orf15Q8WU43 125 aaKnown RBP13.17□□□□□ -0.3
CTSA-210ENST00000606000 SMARCD2Q92925 531 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 MYLPFQ96A32 169 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 SMG9Q9H0W8 520 aaKnown RBP13.17□□□□□ -0.3
CTSA-210ENST00000606000 KCNH6Q9H252 994 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 SMYD3Q9H7B4 428 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 ZFP14Q9HCL3 533 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 NXF1Q9UBU9 619 aaKnown RBP13.17□□□□□ -0.3
CTSA-210ENST00000606000 TRAF3IP3Q9Y228 551 aa13.17□□□□□ -0.3
CTSA-210ENST00000606000 GREB1Q4ZG55 1949 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 MIA3Q5JRA6 1907 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 H0Y858 1186 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 GALR2O43603 387 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 CALUO43852 315 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 PHACTR2O75167 634 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 CLSTN1O94985 981 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 PRAMEF12O95522 483 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 C4BPAP04003 597 aaKnown RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 DCNP07585 359 aaKnown RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 TRIM49P0CI25 452 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 TRIM49CP0CI26 452 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 HMGA1P17096 107 aaKnown RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 CD72P21854 359 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 RFX1P22670 979 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 NR2F2P24468 414 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 LHX1P48742 406 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 TNNC1P63316 161 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 TRPC3Q13507 836 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 MLF2Q15773 248 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 ZCWPW2Q504Y3 356 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 GPR158Q5T848 1215 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 FAM171BQ6P995 826 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 SCARA5Q6ZMJ2 495 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 TMEM150AQ86TG1 271 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 ITIH5Q86UX2 942 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 SPATA2LQ8IUW3 424 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 CCDC47Q96A33 483 aaKnown RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 EEF2KMTQ96G04 330 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 SDCBP2Q9H190 292 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.3
CTSA-210ENST00000606000 HEBP1Q9NRV9 189 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 MAGED2Q9UNF1 606 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 MTF2Q9Y483 593 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 ASB3Q9Y575 518 aa13.16□□□□□ -0.3
CTSA-210ENST00000606000 KIF26AQ9ULI4 1882 aaPredicted RBP13.16□□□□□ -0.3
CTSA-210ENST00000606000 GOLGA6L4A6NEF3 574 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 SHISA7A6NL88 538 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 HEPACAM2A8MVW5 462 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 GADD45BO75293 160 aaPredicted RBP13.15□□□□□ -0.3
CTSA-210ENST00000606000 TADA3O75528 432 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 AKAP3O75969 853 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 PCSK1P29120 753 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 GDI1P31150 447 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 PTPN5P54829 565 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 CDH8P55286 799 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 CLDN10P78369 228 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 CYP27A1Q02318 531 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 FAM160A1Q05DH4 1040 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 SMARCB1Q12824 385 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 NFE2Q16621 373 aaPredicted RBP13.15□□□□□ -0.3
CTSA-210ENST00000606000 SLC44A4Q53GD3 710 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 MDH1BQ5I0G3 518 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 SPOPLQ6IQ16 392 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 TPRG1Q6ZUI0 275 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 DPH6Q7L8W6 267 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 SCN4BQ8IWT1 228 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 GUF1Q8N442 669 aaKnown RBP13.15□□□□□ -0.3
CTSA-210ENST00000606000 OR6B3Q8NGW1 331 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 SPATA18Q8TC71 538 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 TMEM174Q8WUU8 243 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 PCED1BQ96HM7 432 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 LRRC3BQ96PB8 259 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 CDH9Q9ULB4 789 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 PATJQ8NI35 1801 aa13.15□□□□□ -0.3
CTSA-210ENST00000606000 SLC38A8A6NNN8 435 aa13.14□□□□□ -0.31
CTSA-210ENST00000606000 STAU1O95793 577 aaKnown RBP13.14□□□□□ -0.31
CTSA-210ENST00000606000 F11P03951 625 aa13.14□□□□□ -0.31
CTSA-210ENST00000606000 GLULP15104 373 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms