RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 STX17P56962 302 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 PSMC1P62191 440 aaKnown RBP18.01■□□□□ 0.47
TRIM28-215ENST00000601150 VEPH1Q14D04 833 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 MAPRE1Q15691 268 aaKnown RBP18.01■□□□□ 0.47
TRIM28-215ENST00000601150 SLC5A9Q2M3M2 681 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 FAM171BQ6P995 826 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 SCARA5Q6ZMJ2 495 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 PDZD4Q76G19 769 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-215ENST00000601150 FRMD5Q7Z6J6 570 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 ITIH5Q86UX2 942 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 SPATA2LQ8IUW3 424 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-215ENST00000601150 HS6ST3Q8IZP7 471 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 MLKLQ8NB16 471 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 CCDC150Q8NCX0 1101 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 FAM200AQ8TCP9 573 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 TAS1R2Q8TE23 839 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 FGF13Q92913 245 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 ELMO3Q96BJ8 720 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 PI4K2AQ9BTU6 479 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 DNAJC25Q9H1X3 360 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 ASAH2Q9NR71 780 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 IGSF9Q9P2J2 1179 aa18.01■□□□□ 0.47
TRIM28-215ENST00000601150 A8MXQ7 604 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 ASGR2P07307 311 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 MYL4P12829 197 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 ATF6P18850 670 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 EPHA5P54756 1037 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 CDH8P55286 799 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 CCDC142Q17RM4 750 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 CFAP221Q4G0U5 840 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 CCDC40Q4G0X9 1142 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 PRSS36Q5K4E3 855 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 SPOPLQ6IQ16 392 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 C4orf50Q6ZRC1 276 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 NPAS3Q8IXF0 933 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 GPT2Q8TD30 523 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 ING5Q8WYH8 240 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 EDAQ92838 391 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 PSMG2Q969U7 264 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 FUBP3Q96I24 572 aaKnown RBP eCLIP18■□□□□ 0.47
TRIM28-215ENST00000601150 C1QTNF1Q9BXJ1 281 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 CRTAC1Q9NQ79 661 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 RWDD2AQ9UIY3 292 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 SORCS3Q9UPU3 1222 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 NME7Q9Y5B8 376 aa18■□□□□ 0.47
TRIM28-215ENST00000601150 MICAL2O94851 1124 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 FGFR1OPO95684 399 aaKnown RBP17.99■□□□□ 0.47
TRIM28-215ENST00000601150 GNA14O95837 355 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 CEBPBP17676 345 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 CYP2F1P24903 491 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 RAP1GAPP47736 663 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 RPL10AP62906 217 aaKnown RBP17.99■□□□□ 0.47
TRIM28-215ENST00000601150 NOP14P78316 857 aaKnown RBP17.99■□□□□ 0.47
TRIM28-215ENST00000601150 ZXDAP98168 799 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 MTMR3Q13615 1198 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 DNAJB7Q7Z6W7 309 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-215ENST00000601150 FBXL13Q8NEE6 735 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 MYCBPAPQ8TBZ2 947 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 NXPE3Q969Y0 559 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 SLC35C1Q96A29 364 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 LPIN3Q9BQK8 851 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 LRRC3Q9BY71 257 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 SDCBP2Q9H190 292 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 KCNK12Q9HB15 430 aa17.99■□□□□ 0.47
TRIM28-215ENST00000601150 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.99■□□□□ 0.471e-10■■■■■ 28.7
TRIM28-215ENST00000601150 MAGEC2Q9UBF1 373 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-215ENST00000601150 GREB1Q4ZG55 1949 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 DENND4CQ5VZ89 1909 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 ANHXE9PGG2 379 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 PTPN1P18031 435 aaKnown RBP17.98■□□□□ 0.47
TRIM28-215ENST00000601150 CCR2P41597 374 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 MAGEA11P43364 429 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 ASPAP45381 313 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 CYP27A1Q02318 531 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 TDGQ13569 410 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 CBWD6Q4V339 395 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 MDH1BQ5I0G3 518 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 CBWD3Q5JTY5 395 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 CBWD5Q5RIA9 395 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 TMC8Q8IU68 726 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 UBALD2Q8IYN6 164 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 B3GALNT2Q8NCR0 500 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 GIPC2Q8TF65 315 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 SEMA4DQ92854 862 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 MYLPFQ96A32 169 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 TCEAL4Q96EI5 215 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 SRRTQ9BXP5 876 aaKnown RBP17.98■□□□□ 0.47
TRIM28-215ENST00000601150 BCO2Q9BYV7 579 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 NIF3L1Q9GZT8 377 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 DPEP3Q9H4B8 488 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 APOBEC3GQ9HC16 384 aaKnown RBP17.98■□□□□ 0.47
TRIM28-215ENST00000601150 RAB20Q9NX57 234 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 GDE1Q9NZC3 331 aa17.98■□□□□ 0.47
TRIM28-215ENST00000601150 MUC3AQ02505 3323 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 OBSL1O75147 1896 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 FGF19O95750 216 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 HTR4Q13639 388 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 TAF12Q16514 161 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 MTSS1LQ765P7 747 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 MCRS1Q96EZ8 462 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms