RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 FBXW11Q9UKB1 542 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 NME7Q9Y5B8 376 aa19.43■□□□□ 0.7
LIG1-216ENST00000598938 BECN2A8MW95 431 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 CPB1P15086 417 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 LMO2P25791 158 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 PCSK1P29120 753 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 ARPP19P56211 112 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 GPR17Q13304 367 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 PTPN21Q16825 1174 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 TPGS2Q68CL5 300 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 APTXQ7Z2E3 356 aaKnown RBP19.42■□□□□ 0.7
LIG1-216ENST00000598938 ZNF461Q8TAF7 563 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 FAM200AQ8TCP9 573 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 PKMYT1Q99640 499 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 INTS2Q9H0H0 1204 aaKnown RBP19.42■□□□□ 0.7
LIG1-216ENST00000598938 DZANK1Q9NVP4 752 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 GCNT4Q9P109 453 aa19.42■□□□□ 0.7
LIG1-216ENST00000598938 CFAP54Q96N23 3096 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 LRRC10BA6NIK2 292 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 HCRTO43612 131 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 VNN2O95498 520 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 WEE2P0C1S8 567 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 SPATA31D3P0C874 917 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 ATP1A3P13637 1013 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 ATF2P15336 505 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 ACAT1P24752 427 aaKnown RBP19.41■□□□□ 0.7
LIG1-216ENST00000598938 GNL1P36915 607 aaPredicted RBP19.41■□□□□ 0.7
LIG1-216ENST00000598938 COPB1P53618 953 aaKnown RBP19.41■□□□□ 0.7
LIG1-216ENST00000598938 INCA1Q0VD86 236 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 INTS6LQ5JSJ4 861 aaKnown RBP19.41■□□□□ 0.7
LIG1-216ENST00000598938 RNF19BQ6ZMZ0 732 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 GBP6Q6ZN66 633 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 SPATA31D4Q6ZUB0 917 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 LUZP1Q86V48 1076 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 LRRTM3Q86VH5 581 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 KREMEN2Q8NCW0 462 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 ANKRD20A12PQ8NF67 263 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 OR6B3Q8NGW1 331 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 RPGRIP1Q96KN7 1286 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 NT5C1BQ96P26 610 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 VPS16Q9H269 839 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 PLEKHA4Q9H4M7 779 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 FAM124BQ9H5Z6 455 aaPredicted RBP19.41■□□□□ 0.7
LIG1-216ENST00000598938 MAN1C1Q9NR34 630 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 AFF4Q9UHB7 1163 aaKnown RBP19.41■□□□□ 0.7
LIG1-216ENST00000598938 DPP7Q9UHL4 492 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 CDH9Q9ULB4 789 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 MAFFQ9ULX9 164 aa19.41■□□□□ 0.7
LIG1-216ENST00000598938 GFRA3O60609 400 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 TPM2P07951 284 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 CDK11BP21127 795 aaKnown RBP19.4■□□□□ 0.7
LIG1-216ENST00000598938 TSPY1Q01534 308 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 SMARCB1Q12824 385 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 LRMPQ12912 555 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 CUL2Q13617 745 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 EXOC3L4Q17RC7 722 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 SLC39A12Q504Y0 691 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 ANKRD54Q6NXT1 300 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 DCP1BQ8IZD4 617 aaKnown RBP19.4■□□□□ 0.7
LIG1-216ENST00000598938 SYT15Q9BQS2 421 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 CRACR2AQ9BSW2 395 aa19.4■□□□□ 0.7
LIG1-216ENST00000598938 MTMR11A4FU01 709 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 A8MXQ7 604 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 PAPLNO95428 1278 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 PDGFRBP09619 1106 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 SLC9A1P19634 815 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 TBXAS1P24557 533 aaPredicted RBP19.39■□□□□ 0.69
LIG1-216ENST00000598938 AVPR2P30518 371 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 FOXK2Q01167 660 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 FAM171BQ6P995 826 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 TRIM65Q6PJ69 517 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 ELMSAN1Q6PJG2 1045 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 UNC93AQ86WB7 457 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 TCEAL8Q8IYN2 117 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 UBR7Q8N806 425 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 ARID3AQ99856 593 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 CRTAC1Q9NQ79 661 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 TMLHEQ9NVH6 421 aa19.39■□□□□ 0.69
LIG1-216ENST00000598938 ZFHX2Q9C0A1 2572 aaPredicted RBP19.39■□□□□ 0.69
LIG1-216ENST00000598938 LGALS16A8MUM7 142 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 PES1O00541 588 aaKnown RBP19.38■□□□□ 0.69
LIG1-216ENST00000598938 ATP2C2O75185 946 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 CILPO75339 1184 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 SEC24AO95486 1093 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 HOXB8P17481 243 aaPredicted RBP19.38■□□□□ 0.69
LIG1-216ENST00000598938 PON1P27169 355 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 NDST1P52848 882 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 PSMC1P62191 440 aaKnown RBP19.38■□□□□ 0.69
LIG1-216ENST00000598938 TPM4P67936 248 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 GCNT1Q02742 428 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 ADCY1Q08828 1119 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 PHLDB3Q6NSJ2 640 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 SYCE2Q6PIF2 218 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 RTL10Q7L3V2 364 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 ARHGEF19Q8IW93 802 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 TTC39CQ8N584 583 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 C2orf15Q8WU43 125 aaKnown RBP19.38■□□□□ 0.69
LIG1-216ENST00000598938 PGLYRP2Q96PD5 576 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 DPEP3Q9H4B8 488 aa19.38■□□□□ 0.69
LIG1-216ENST00000598938 SFXN1Q9H9B4 322 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms