RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 GPATCH1Q9BRR8 931 aaKnown RBP12.86□□□□□ -0.35
LIG1-207ENST00000594759 CAPN8A6NHC0 703 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 RAD17O75943 681 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 CFBP00751 764 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 POLR2MP0CAP2 368 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 XIAPP98170 497 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 UBE2SQ16763 222 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 WDR72Q3MJ13 1102 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 CCDC127Q96BQ5 260 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 KRT76Q01546 638 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 NR1D2Q14995 579 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 SEC23AQ15436 765 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 CHI3L2Q15782 390 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 NADK2Q4G0N4 442 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 EGFLAMQ63HQ2 1017 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 ERLEC1Q96DZ1 483 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 RMND5BQ96G75 393 aaPredicted RBP12.86□□□□□ -0.35
LIG1-207ENST00000594759 FUT4P22083 530 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 DLGAP5Q15398 846 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 EDRF1Q3B7T1 1238 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 FRA10AC1Q70Z53 315 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 KCTD1Q719H9 257 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ZBTB46Q86UZ6 589 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 OSBPL6Q9BZF3 934 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ING2Q9H160 280 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 MYRFQ9Y2G1 1151 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 INPP5FQ9Y2H2 1132 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ANKRD26Q9UPS8 1709 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 GYS1P13807 737 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ENO3P13929 434 aaPredicted RBP12.85□□□□□ -0.35
LIG1-207ENST00000594759 TCN1P20061 433 aaPredicted RBP12.85□□□□□ -0.35
LIG1-207ENST00000594759 SLC25A3Q00325 362 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 VPS72Q15906 364 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 RSBN1LQ6PCB5 846 aaPredicted RBP12.85□□□□□ -0.35
LIG1-207ENST00000594759 RFWD2Q8NHY2 731 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 KRT35Q92764 455 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ANKRD36BP1Q96IX9 119 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 SENP7Q9BQF6 1050 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 INTS2Q9H0H0 1204 aaKnown RBP12.85□□□□□ -0.35
LIG1-207ENST00000594759 PCIF1Q9H4Z3 704 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ZDHHC18Q9NUE0 388 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 COL5A2P05997 1499 aaPredicted RBP12.85□□□□□ -0.35
LIG1-207ENST00000594759 TRIM64CA6NLI5 447 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 TM9SF1O15321 606 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ECE2O60344 883 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 GDF11O95390 407 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 PROCP04070 461 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 MYBP10242 640 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 SMARCA1P28370 1054 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 CHKAP35790 457 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 PTK7Q13308 1070 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 GRB10Q13322 594 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 C3orf67Q6ZVT6 689 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 PCGF5Q86SE9 256 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 HEATR4Q86WZ0 1026 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 MCF2L2Q86YR7 1114 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 TMEM79Q9BSE2 394 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 S100A14Q9HCY8 104 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 AP4B1Q9Y6B7 739 aa12.85□□□□□ -0.35
LIG1-207ENST00000594759 ECHS1P30084 290 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 AQP4P55087 323 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 CATSPER3Q86XQ3 398 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.84□□□□□ -0.35
LIG1-207ENST00000594759 RBM15BQ8NDT2 890 aaKnown RBP12.84□□□□□ -0.35
LIG1-207ENST00000594759 PSTPIP2Q9H939 334 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 CROTQ9UKG9 612 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 TELO2Q9Y4R8 837 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 FAM237BA0A1B0GVD1 139 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 MAGEC1O60732 1142 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 TM7SF2O76062 418 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 HSPA4LO95757 839 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 TUFMP49411 452 aaKnown RBP12.84□□□□□ -0.35
LIG1-207ENST00000594759 GPSM2P81274 684 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 NCOA4Q13772 614 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 FNDC8Q8TC99 324 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 HPS1Q92902 700 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 SLC24A2Q9UI40 661 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 SPDYE16A6NNV3 312 aaPredicted RBP12.84□□□□□ -0.35
LIG1-207ENST00000594759 DDHD2O94830 711 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 FDFT1P37268 417 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 RAB15P59190 212 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 MTMR2Q13614 643 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 GIT2Q14161 759 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 TRABD2AQ86V40 505 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 UTP4Q969X6 686 aaKnown RBP12.84□□□□□ -0.35
LIG1-207ENST00000594759 SKA1Q96BD8 255 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 SLC7A6OSQ96CW6 309 aaPredicted RBP12.84□□□□□ -0.35
LIG1-207ENST00000594759 PWWP2AQ96N64 755 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 TSPAN18Q96SJ8 248 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 GIN1Q9NXP7 522 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 SERPINB13Q9UIV8 391 aa12.84□□□□□ -0.35
LIG1-207ENST00000594759 TAF4O00268 1085 aa12.83□□□□□ -0.36
LIG1-207ENST00000594759 JAK1P23458 1154 aa12.83□□□□□ -0.36
LIG1-207ENST00000594759 RXRBP28702 533 aa12.83□□□□□ -0.36
LIG1-207ENST00000594759 ASTE1Q2TB18 679 aaPredicted RBP12.83□□□□□ -0.36
LIG1-207ENST00000594759 ZNF618Q5T7W0 954 aa12.83□□□□□ -0.36
LIG1-207ENST00000594759 TEDDM1Q5T9Z0 273 aa12.83□□□□□ -0.36
LIG1-207ENST00000594759 KLHL35Q6PF15 583 aa12.83□□□□□ -0.36
LIG1-207ENST00000594759 TXNRD3Q86VQ6 643 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms