RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 KPNA7A9QM74 516 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 SPECC1L-ADORA2AF8WAN1 911 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 HAPLN1P10915 354 aaPredicted RBP13.45□□□□□ -0.26
UPF1-203ENST00000594504 TGM1P22735 817 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 CASP1P29466 404 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 CXCL12P48061 93 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 TUFMP49411 452 aaKnown RBP13.45□□□□□ -0.26
UPF1-203ENST00000594504 CASP5P51878 434 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 EHHADHQ08426 723 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 SRSF5Q13243 272 aaKnown RBP13.45□□□□□ -0.26
UPF1-203ENST00000594504 PUM1Q14671 1186 aaKnown RBP eCLIP13.45□□□□□ -0.26
UPF1-203ENST00000594504 PON2Q15165 354 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 ARHGAP15Q53QZ3 475 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 FAM26FQ5R3K3 315 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 SDHAF4Q5VUM1 108 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 Q6ZS52 159 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 ITIH5Q86UX2 942 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 FMR1NBQ8N0W7 255 aaPredicted RBP13.45□□□□□ -0.26
UPF1-203ENST00000594504 ACCSQ96QU6 501 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 FAM213AQ9BRX8 229 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 FGFBP2Q9BYJ0 223 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 TASP1Q9H6P5 420 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 ABI2Q9NYB9 513 aaPredicted RBP13.45□□□□□ -0.26
UPF1-203ENST00000594504 DLL3Q9NYJ7 618 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 DSEQ9UL01 958 aa13.45□□□□□ -0.26
UPF1-203ENST00000594504 MYBPHLA2RUH7 354 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 CHURC1-FNTBB4DL54 471 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 EIF3DO15371 548 aaKnown RBP eCLIP13.44□□□□□ -0.26
UPF1-203ENST00000594504 HRO43593 1189 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 HCRTO43612 131 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 CTHP32929 405 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 FNTBP49356 437 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 CCR3P51677 355 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 TFAMQ00059 246 aaKnown RBP13.44□□□□□ -0.26
UPF1-203ENST00000594504 FAM160A1Q05DH4 1040 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 HEATR6Q6AI08 1181 aaKnown RBP13.44□□□□□ -0.26
UPF1-203ENST00000594504 MAMSTRQ6ZN01 415 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 PRR23BQ6ZRT6 265 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 TMEM150AQ86TG1 271 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 ENGASEQ8NFI3 743 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 BPIFB1Q8TDL5 484 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 NOC3LQ8WTT2 800 aaKnown RBP13.44□□□□□ -0.26
UPF1-203ENST00000594504 PI4K2AQ9BTU6 479 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 PCIF1Q9H4Z3 704 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 C8orf33Q9H7E9 229 aaPredicted RBP13.44□□□□□ -0.26
UPF1-203ENST00000594504 TMEM206Q9H813 350 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 PARD6AQ9NPB6 346 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 HSFX1Q9UBD0 423 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 AGAP1Q9UPQ3 857 aa13.44□□□□□ -0.26
UPF1-203ENST00000594504 KLRC4O43908 158 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 PRPF6O94906 941 aaKnown RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 F11P03951 625 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 ITGB3P05106 788 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 HMGA1P17096 107 aaKnown RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 PAX3P23760 479 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 ACAT1P24752 427 aaKnown RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 POLR2BP30876 1174 aaKnown RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 ATXN1P54253 815 aaKnown RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 NRLP54845 237 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 MLLT6P55198 1093 aaPredicted RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 SPEM2Q0P670 501 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 VEPH1Q14D04 833 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 POSTNQ15063 836 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 TAF12Q16514 161 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 CCDC142Q17RM4 750 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 SV2CQ496J9 727 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 ARHGAP29Q52LW3 1261 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 TXNDC8Q6A555 127 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 SYCP3Q8IZU3 236 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 SPEM1Q8N4L4 309 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 MAB21L3Q8N8X9 362 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 SPPL2BQ8TCT7 592 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 HPS3Q969F9 1004 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 FAM126AQ9BYI3 521 aaPredicted RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 GKN1Q9NS71 199 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 EXOC1Q9NV70 894 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 USP18Q9UMW8 372 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 MAGED2Q9UNF1 606 aaPredicted RBP13.43□□□□□ -0.26
UPF1-203ENST00000594504 CCL26Q9Y258 94 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 VPS13AQ96RL7 3174 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 DENND4CQ5VZ89 1909 aa13.43□□□□□ -0.26
UPF1-203ENST00000594504 UBE4BO95155 1302 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 K7ESF4 209 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 PRPF40AO75400 957 aaKnown RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 IL18RAPO95256 599 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 FGF19O95750 216 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 CDC25CP30307 473 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 PSMD2Q13200 908 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 DDR2Q16832 855 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 LMBRD2Q68DH5 695 aaPredicted RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 TRIM68Q6AZZ1 485 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 PKN3Q6P5Z2 889 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 CLEC17AQ6ZS10 378 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 EPM2AIP1Q7L775 607 aaPredicted RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 OSTM1Q86WC4 334 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 RALGPS2Q86X27 583 aaPredicted RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 DCP1BQ8IZD4 617 aaKnown RBP13.42□□□□□ -0.26
UPF1-203ENST00000594504 CMTM8Q8IZV2 173 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 PDCL2Q8N4E4 241 aa13.42□□□□□ -0.26
UPF1-203ENST00000594504 CSGALNACT2Q8N6G5 542 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms