RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CETN1Q12798 172 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 VEPH1Q14D04 833 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 RBM43Q6ZSC3 357 aaKnown RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 GET4Q7L5D6 327 aaPredicted RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 ITIH5Q86UX2 942 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 FAM200AQ8TCP9 573 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 FUBP3Q96I24 572 aaKnown RBP eCLIP16.05■□□□□ 0.16
UPF1-202ENST00000594243 TNIP3Q96KP6 325 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 PKMYT1Q99640 499 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 CORO1BQ9BR76 489 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 PI4K2AQ9BTU6 479 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 CEP72Q9P209 647 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 MAGEC2Q9UBF1 373 aaPredicted RBP16.05■□□□□ 0.16
UPF1-202ENST00000594243 COQ4Q9Y3A0 265 aa16.05■□□□□ 0.16
UPF1-202ENST00000594243 PMM2O15305 246 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 HCRTO43612 131 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 N4BP1O75113 896 aaKnown RBP16.04■□□□□ 0.16
UPF1-202ENST00000594243 ATP2C2O75185 946 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 MICAL2O94851 1124 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 ALADP13716 330 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 PTPN1P18031 435 aaKnown RBP16.04■□□□□ 0.16
UPF1-202ENST00000594243 FMO5P49326 533 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 PSMC1P62191 440 aaKnown RBP16.04■□□□□ 0.16
UPF1-202ENST00000594243 RPL10AP62906 217 aaKnown RBP16.04■□□□□ 0.16
UPF1-202ENST00000594243 DPCR1Q3MIW9 517 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CFAP221Q4G0U5 840 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CBWD6Q4V339 395 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CBWD3Q5JTY5 395 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CBWD5Q5RIA9 395 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CCDC183Q5T5S1 534 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 SPOPLQ6IQ16 392 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 SASS6Q6UVJ0 657 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 SCARA5Q6ZMJ2 495 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 PDZD4Q76G19 769 aaPredicted RBP16.04■□□□□ 0.16
UPF1-202ENST00000594243 UNC93AQ86WB7 457 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 MYCBPAPQ8TBZ2 947 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 PSMG2Q969U7 264 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 ELMO3Q96BJ8 720 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 DNAI2Q9GZS0 605 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 SMYD3Q9H7B4 428 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CYP3A43Q9HB55 503 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 CRTAC1Q9NQ79 661 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 ASAH2Q9NR71 780 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 EPS15L1Q9UBC2 864 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 LIMD1Q9UGP4 676 aa16.04■□□□□ 0.16
UPF1-202ENST00000594243 MRPS23Q9Y3D9 190 aaKnown RBP16.04■□□□□ 0.16
UPF1-202ENST00000594243 P4HA2O15460 535 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 FGF19O95750 216 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 LAMP2P13473 410 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 PTMSP20962 102 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 ASPAP45381 313 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 RAP1GAPP47736 663 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 CDR1P51861 262 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 CYP27A1Q02318 531 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 TAF12Q16514 161 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 DNAJB7Q7Z6W7 309 aaPredicted RBP16.03■□□□□ 0.16
UPF1-202ENST00000594243 CREBRFQ8IUR6 639 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 TRIM59Q8IWR1 403 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 TTC39CQ8N584 583 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 TTC9BQ8N6N2 239 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 B3GALNT2Q8NCR0 500 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 SEMA4DQ92854 862 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 BCO2Q9BYV7 579 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 NIF3L1Q9GZT8 377 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 SDCBP2Q9H190 292 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 DNAJC25Q9H1X3 360 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 APOBEC3GQ9HC16 384 aaKnown RBP16.03■□□□□ 0.16
UPF1-202ENST00000594243 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.03■□□□□ 0.16
UPF1-202ENST00000594243 CDH7Q9ULB5 785 aa16.03■□□□□ 0.16
UPF1-202ENST00000594243 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.03■□□□□ 0.16
UPF1-202ENST00000594243 C2orf16Q68DN1 1984 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 PI4K2BG5E9Z4 385 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 SOAT2O75908 522 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 CYP2F1P24903 491 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 EPHA5P54756 1037 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 KCNH2Q12809 1159 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 MDH1BQ5I0G3 518 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 VSTM1Q6UX27 236 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 FAM114A1Q8IWE2 563 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 HS6ST3Q8IZP7 471 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 ITFG1Q8TB96 612 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 FGF13Q92913 245 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 NXPE3Q969Y0 559 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 MYLPFQ96A32 169 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 PCED1BQ96HM7 432 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 MED15Q96RN5 788 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 MYADMQ96S97 322 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 FAM124BQ9H5Z6 455 aaPredicted RBP16.02■□□□□ 0.16
UPF1-202ENST00000594243 IGSF9Q9P2J2 1179 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 NME7Q9Y5B8 376 aa16.02■□□□□ 0.16
UPF1-202ENST00000594243 DCXO43602 365 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 LRRN2O75325 713 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 AFPP02771 609 aaKnown RBP16.01■□□□□ 0.15
UPF1-202ENST00000594243 CSH1P0DML2 217 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 CSH2P0DML3 217 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 MYL4P12829 197 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 ATF6P18850 670 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 MAGEA11P43364 429 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 NDST1P52848 882 aa16.01■□□□□ 0.15
UPF1-202ENST00000594243 PRSS36Q5K4E3 855 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms