RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IFNL1Q8IU54 200 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 BCAS4Q8TDM0 211 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 FNIP1Q8TF40 1166 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 PGM2Q96G03 612 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 TMEM176AQ96HP8 235 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 HPDLQ96IR7 371 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 ACAP3Q96P50 834 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 DDX56Q9NY93 547 aaKnown RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 BCCIPQ9P287 314 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 NOVA2Q9UNW9 492 aaKnown RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 RALGAPA2Q2PPJ7 1873 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 SRRM3A6NNA2 597 aaPredicted RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 DCDC2CA8MYV0 355 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 CITO14578 2027 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 ATF2P15336 505 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 CYP2B6P20813 491 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 GRM5P41594 1212 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 INCA1Q0VD86 236 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 KIZQ2M2Z5 673 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 UBAP2Q5T6F2 1119 aaKnown RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 DRICH1Q6PGQ1 229 aaPredicted RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 TRMT10CQ7L0Y3 403 aaKnown RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 CROCCP2Q86T23 111 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 KAT2BQ92831 832 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 CPXM1Q96SM3 734 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 GCOM2Q9BZD3 368 aaPredicted RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 FAM49AQ9H0Q0 323 aaPredicted RBP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 ADAMTS10Q9H324 1103 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 WDR35Q9P2L0 1181 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 TJP2Q9UDY2 1190 aa20.79■□□□□ 0.92
CLIP3-206ENST00000593074 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLIP3-206ENST00000593074 PI4K2BG5E9Z4 385 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 CAND2O75155 1236 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 RGS2P41220 211 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 PPP2R2AP63151 447 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 ORC1Q13415 861 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 CCL14Q16627 93 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 DCAF4L1Q3SXM0 396 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 MFSD7Q6UXD7 560 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 SPOCD1Q6ZMY3 1216 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 TRAIPQ9BWF2 469 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 TSPYL1Q9H0U9 437 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 AGAP1Q9UPQ3 857 aa20.78■□□□□ 0.92
CLIP3-206ENST00000593074 TJP3O95049 919 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 KRT3P12035 628 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 RFC1P35251 1148 aaPredicted RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 ITGA8P53708 1063 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 MAGOHP61326 146 aaKnown RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 ADCY2Q08462 1091 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 BYSLQ13895 437 aaKnown RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 MFSD10Q14728 455 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 TXNRD3NBQ6F5E7 133 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 XYLT1Q86Y38 959 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 CCDC89Q8N998 374 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 ZFYVE28Q9HCC9 887 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 DPP3Q9NY33 737 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 GINS2Q9Y248 185 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 hCG_1818297A0A087WSY0 165 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 SMIM35A0A1B0GVV1 85 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 LIASO43766 372 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 MICAL2O94851 1124 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 HMGCRP04035 888 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 KLRC2P26717 231 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 GABRB2P47870 512 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 PSMC1P62191 440 aaKnown RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 RBP5P82980 135 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 LMNB2Q03252 620 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 TMEM62Q0P6H9 643 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 TRIP13Q15645 432 aaPredicted RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 PTGISQ16647 500 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 ZNF365Q70YC5 407 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 APBB1IPQ7Z5R6 666 aaPredicted RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 FAM118BQ9BPY3 351 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 AP5M1Q9H0R1 490 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 EPN3Q9H201 632 aa20.77■□□□□ 0.92
CLIP3-206ENST00000593074 BARX2Q9UMQ3 279 aaPredicted RBP20.77■□□□□ 0.92
CLIP3-206ENST00000593074 KAT6AQ92794 2004 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 GOLGA8SH3BPF8 625 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 ERBB2P04626 1255 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 VDRP11473 427 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 KRT10P13645 584 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 CPT1AP50416 773 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 SLC25A11Q02978 314 aaKnown RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 ZNF268Q14587 947 aaPredicted RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 ODF2Q5BJF6 829 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 TFDP3Q5H9I0 405 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 CCDC25Q86WR0 208 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 TTC39CQ8N584 583 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 JOSD2Q8TAC2 188 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 RAPGEF5Q92565 580 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 LENG1Q96BZ8 264 aaPredicted RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 CDC42EP4Q9H3Q1 356 aaKnown RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 MBLAC1A4D2B0 266 aaPredicted RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 GPR32O75388 356 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 CYP2C9P11712 490 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 ATF7P17544 494 aaPredicted RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 PSMA2P25787 234 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 HOXA11P31270 313 aaPredicted RBP20.76■□□□□ 0.91
CLIP3-206ENST00000593074 CHKAP35790 457 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 ADCY8P40145 1251 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms