RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	C9orf57	Q5W0N0	161 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	C11orf63	Q6NUN7	778 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	LLGL2	Q6P1M3	1020 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	LRRC52	Q8N7C0	313 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	ZNF564	Q8TBZ8	553 aa	Predicted RBP	16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	MS4A14	Q96JA4	679 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	FAM105A	Q9NUU6	356 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	SMARCAL1	Q9NZC9	954 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	UVRAG	Q9P2Y5	699 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	PADI3	Q9ULW8	664 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	PIR	O00625	290 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	GPR182	O15218	404 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	MGEA5	O60502	916 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	HSF2BP	O75031	334 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	RRM1	P23921	792 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	CD52	P31358	61 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	CDH5	P33151	784 aa	Predicted RBP	16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	ORC1	Q13415	861 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	LPIN1	Q14693	890 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	KDM7A	Q6ZMT4	941 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	EP400NL	Q6ZTU2	488 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	WDTC1	Q8N5D0	677 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	SH3TC2	Q8TF17	1288 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	FAM124B	Q9H5Z6	455 aa	Predicted RBP	16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	ALG6	Q9Y672	507 aa		16.31	■□□□□ 0.2
DDX39A-209	ENST00000589318	CES2	O00748	559 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	DDX3Y	O15523	660 aa	Known RBP	16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	LSM8	O95777	96 aa	Known RBP	16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	MYBL1	P10243	752 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	GHR	P10912	638 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	SLC8A3	P57103	927 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	TNNC1	P63316	161 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	MYO1E	Q12965	1108 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	SNCB	Q16143	134 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	ZNF618	Q5T7W0	954 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	TRAF7	Q6Q0C0	670 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	GSTCD	Q8NEC7	633 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	RIN2	Q8WYP3	895 aa	Predicted RBP	16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	P3H4	Q92791	437 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	CAVIN3	Q969G5	261 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	VCPIP1	Q96JH7	1222 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	ZFP42	Q96MM3	310 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	PPP1R10	Q96QC0	940 aa	Known RBP	16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	C11orf70	Q9BRQ4	267 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	16.3	■□□□□ 0.2	7e-7	■■■□□ 16.6
DDX39A-209	ENST00000589318	TRPV6	Q9H1D0	765 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	GOLGA2P5	Q9HBQ8	144 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	AMFR	Q9UKV5	643 aa		16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	BARX2	Q9UMQ3	279 aa	Predicted RBP	16.3	■□□□□ 0.2
DDX39A-209	ENST00000589318	CYP3A5	P20815	502 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	MMP8	P22894	467 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	C1QBP	Q07021	282 aa	Known RBP	16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	DSC3	Q14574	896 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	CAGE1	Q8TC20	777 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	TRIM11	Q96F44	468 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	TMEM176A	Q96HP8	235 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	BTBD6	Q96KE9	485 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	NOD1	Q9Y239	953 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	NME7	Q9Y5B8	376 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	MYO1F	O00160	1098 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	KCNK3	O14649	394 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	TLR3	O15455	904 aa	Known RBP	16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	CD4	P01730	458 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	AFF1	P51825	1210 aa	Known RBP	16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	NDST1	P52848	882 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	SKIDA1	Q1XH10	827 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	DENND1B	Q6P3S1	775 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	CPNE8	Q86YQ8	564 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	TRAIP	Q9BWF2	469 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	TRIM7	Q9C029	511 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	BATF3	Q9NR55	127 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	ADAM22	Q9P0K1	906 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	RNF14	Q9UBS8	474 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	PHF24	Q9UPV7	400 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	SNX9	Q9Y5X1	595 aa		16.29	■□□□□ 0.2
DDX39A-209	ENST00000589318	SPTLC1	O15269	473 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	CKB	P12277	381 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	MESD	Q14696	234 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	DCAF12L1	Q5VU92	463 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	PLEKHA7	Q6IQ23	1121 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	PPP1R2P3	Q6NXS1	205 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	MRPL10	Q7Z7H8	261 aa	Known RBP	16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	PHLDB2	Q86SQ0	1253 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	SPATA4	Q8NEY3	305 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	CD101	Q93033	1021 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	MRPL45	Q9BRJ2	306 aa	Known RBP	16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	ZNF518B	Q9C0D4	1074 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	UNC93B1	Q9H1C4	597 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	STARD7	Q9NQZ5	370 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	CYTH4	Q9UIA0	394 aa		16.28	■□□□□ 0.2
DDX39A-209	ENST00000589318	TCRBV5S1A1T	A0A578	114 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	XPOT	O43592	962 aa	Known RBP	16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	CAND2	O75155	1236 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	CD19	P15391	556 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	ATF7	P17544	494 aa	Predicted RBP	16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	COMT	P21964	271 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	LRPAP1	P30533	357 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	C2orf54	Q08AI8	447 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	PAK2	Q13177	524 aa		16.27	■□□□□ 0.2
DDX39A-209	ENST00000589318	SOWAHA	Q2M3V2	549 aa		16.27	■□□□□ 0.2

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms