RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SOX1O00570 391 aaPredicted RBP23.62■■□□□ 1.37
ATG4D-209ENST00000588857 GABRDO14764 452 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 TRAPPC3O43617 180 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 TADA2AO75478 443 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 DGKIO75912 1065 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 ITGB1P05556 798 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 WDR5P61964 334 aaKnown RBP23.62■■□□□ 1.37
ATG4D-209ENST00000588857 DENND1BQ6P3S1 775 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 C12orf29Q8N999 325 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 SPATA18Q8TC71 538 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 TMEM175Q9BSA9 504 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 COLEC11Q9BWP8 271 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 DDX43Q9NXZ2 648 aaKnown RBP23.62■■□□□ 1.37
ATG4D-209ENST00000588857 DNAI1Q9UI46 699 aa23.62■■□□□ 1.37
ATG4D-209ENST00000588857 TIMM13Q9Y5L4 95 aaPredicted RBP23.62■■□□□ 1.37
ATG4D-209ENST00000588857 A0A0A6YYK5 440 aaPredicted RBP23.61■■□□□ 1.37
ATG4D-209ENST00000588857 F8W810 466 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 MICAL2O94851 1124 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 CYP11A1P05108 521 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 NOP2P46087 812 aaKnown RBP23.61■■□□□ 1.37
ATG4D-209ENST00000588857 IFI16Q16666 785 aaKnown RBP23.61■■□□□ 1.37
ATG4D-209ENST00000588857 LCLAT1Q6UWP7 414 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 OTOP2Q7RTS6 562 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 PHF13Q86YI8 300 aaPredicted RBP23.61■■□□□ 1.37
ATG4D-209ENST00000588857 FAM49BQ9NUQ9 324 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 SALL4Q9UJQ4 1053 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 FAN1Q9Y2M0 1017 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 NCANO14594 1321 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 M0QYV0 167 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 NRP1O14786 923 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 HCRTO43612 131 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 BUB1O43683 1085 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 MOCS3O95396 460 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 FGBP02675 491 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 MYBL1P10243 752 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 CDH5P33151 784 aaPredicted RBP23.61■■□□□ 1.37
ATG4D-209ENST00000588857 DEFB103AP81534 67 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 C1orf131Q8NDD1 294 aaKnown RBP23.61■■□□□ 1.37
ATG4D-209ENST00000588857 KIF18AQ8NI77 898 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 RFFLQ8WZ73 363 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 ZNF653Q96CK0 615 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 ALS2CR12Q96Q35 445 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 ADAM22Q9P0K1 906 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 PCDHB8Q9UN66 801 aa23.61■■□□□ 1.37
ATG4D-209ENST00000588857 SLC34A2O95436 690 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 PCSK1P29120 753 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 CASQ1P31415 396 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 SLC11A1P49279 550 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 GOLGA7BQ2TAP0 167 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 PPP1R26Q5T8A7 1209 aaPredicted RBP23.6■■□□□ 1.37
ATG4D-209ENST00000588857 LIN9Q5TKA1 542 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 C16orf59Q7L2K0 433 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 RHOT2Q8IXI1 618 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 MCOLN2Q8IZK6 566 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 SLC35F6Q8N357 371 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 B3GALNT2Q8NCR0 500 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 TRIM58Q8NG06 486 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 LRCH3Q96II8 777 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 VCPIP1Q96JH7 1222 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 WDR24Q96S15 920 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 HESX1Q9UBX0 185 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 GTF3C4Q9UKN8 822 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 ADAM28Q9UKQ2 775 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 TSPAN16Q9UKR8 245 aa23.6■■□□□ 1.37
ATG4D-209ENST00000588857 PTPN1P18031 435 aaKnown RBP23.59■■□□□ 1.37
ATG4D-209ENST00000588857 TYMPP19971 482 aa23.59■■□□□ 1.37
ATG4D-209ENST00000588857 ACAT1P24752 427 aaKnown RBP23.59■■□□□ 1.37
ATG4D-209ENST00000588857 ARHGAP17Q68EM7 881 aa23.59■■□□□ 1.37
ATG4D-209ENST00000588857 FAM117BQ6P1L5 589 aa23.59■■□□□ 1.37
ATG4D-209ENST00000588857 THEM5Q8N1Q8 247 aa23.59■■□□□ 1.37
ATG4D-209ENST00000588857 SLC35G2Q8TBE7 412 aa23.59■■□□□ 1.37
ATG4D-209ENST00000588857 ARHGEF26Q96DR7 871 aa23.59■■□□□ 1.37
ATG4D-209ENST00000588857 ZBBXA8MT70 800 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 PSMC1P62191 440 aaKnown RBP23.58■■□□□ 1.37
ATG4D-209ENST00000588857 C1QBPQ07021 282 aaKnown RBP23.58■■□□□ 1.37
ATG4D-209ENST00000588857 OVOS1Q6IE37 1185 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 MMS22LQ6ZRQ5 1243 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 MON1BQ7L1V2 547 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 ERICH1Q86X53 443 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 WDTC1Q8N5D0 677 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 MSANTD4Q8NCY6 345 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 UBA3Q8TBC4 463 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 LPIN3Q9BQK8 851 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 SYT15Q9BQS2 421 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 C11orf70Q9BRQ4 267 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 CTTNBP2NLQ9P2B4 639 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 HCSTQ9UBK5 93 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 CNOT8Q9UFF9 292 aaKnown RBP23.58■■□□□ 1.37
ATG4D-209ENST00000588857 CDH9Q9ULB4 789 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 SZT2Q5T011 3432 aa23.58■■□□□ 1.37
ATG4D-209ENST00000588857 PTPRSQ13332 1948 aa23.58■■□□□ 1.36
ATG4D-209ENST00000588857 CYP1A2P05177 515 aa23.57■■□□□ 1.36
ATG4D-209ENST00000588857 CALB1P05937 261 aa23.57■■□□□ 1.36
ATG4D-209ENST00000588857 GALTP07902 379 aa23.57■■□□□ 1.36
ATG4D-209ENST00000588857 MMP8P22894 467 aa23.57■■□□□ 1.36
ATG4D-209ENST00000588857 ALDH7A1P49419 539 aaKnown RBP23.57■■□□□ 1.36
ATG4D-209ENST00000588857 ZNF365Q70YC5 407 aa23.57■■□□□ 1.36
ATG4D-209ENST00000588857 CALR3Q96L12 384 aaKnown RBP23.57■■□□□ 1.36
ATG4D-209ENST00000588857 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.57■■□□□ 1.36
ATG4D-209ENST00000588857 CAPN6Q9Y6Q1 641 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms