RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ITGB8P26012 769 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 GTF2H1P32780 548 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 MLH1P40692 756 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 FMO5P49326 533 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ARL4DP49703 201 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 MXI1P50539 228 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 AP3M2P53677 418 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 POU5F1Q01860 360 aaKnown RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 FPGSQ05932 587 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ENPEPQ07075 957 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 PPP3CAQ08209 521 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ORC1Q13415 861 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 PPIGQ13427 754 aaKnown RBP eCLIP5.72□□□□□ -1.49
LIG3-210ENST00000588109 GPNMBQ14956 572 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 TMEM132DQ14C87 1099 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 DUOXA2Q1HG44 320 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 SLC10A6Q3KNW5 377 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 PLA2G4EQ3MJ16 856 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 MIIPQ5JXC2 388 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 GLRA4Q5JXX5 417 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 LMBRD2Q68DH5 695 aaPredicted RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 KRT39Q6A163 491 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 JADE1Q6IE81 842 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 GLB1LQ6UWU2 654 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 FAM43BQ6ZT52 329 aaPredicted RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 SLC24A5Q71RS6 500 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ECHDC2Q86YB7 292 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 WDR49Q8IV35 697 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 CD302Q8IX05 232 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ABI1Q8IZP0 508 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 CCDC150Q8NCX0 1101 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 SMG8Q8ND04 991 aaKnown RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 PARD3BQ8TEW8 1205 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 CACTINQ8WUQ7 758 aaKnown RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 BADQ92934 168 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 LPPQ93052 612 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 SLC35C1Q96A29 364 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 BORCS6Q96GS4 357 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ANKRD36BP1Q96IX9 119 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 SNX27Q96L92 541 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 NAP1L5Q96NT1 182 aaPredicted RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 CGRRF1Q99675 332 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ASB7Q9H672 318 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 RSAD1Q9HA92 442 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 PLEKHA5Q9HAU0 1116 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 TMEM8AQ9HCN3 771 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 IL23AQ9NPF7 189 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 UBN1Q9NPG3 1134 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ZMYND8Q9ULU4 1186 aaPredicted RBP5.72□□□□□ -1.49
LIG3-210ENST00000588109 INPP5FQ9Y2H2 1132 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 PCDHB7Q9Y5E2 793 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 SCN5AQ14524 2016 aa5.72□□□□□ -1.49
LIG3-210ENST00000588109 ABHD14A-ACY1A0A1B0GW23 586 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TTC26A0AVF1 554 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 ARL5CA6NH57 179 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 LRRC10BA6NIK2 292 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 C1QTNF9BB2RNN3 333 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 C9IYK1 514 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 EIF1AYO14602 144 aaKnown RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 ENPP3O14638 875 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 P4HA2O15460 535 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TEX33O43247 280 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 AP5Z1O43299 807 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 XPOTO43592 962 aaKnown RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 EFCAB14O75071 495 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 ZNF623O75123 536 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 EOMESO95936 686 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 AMHP03971 560 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 NFICP08651 508 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 KRT19P08727 400 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TPM1P09493 284 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 PIK3CAP42336 1068 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 KCNJ6P48051 423 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TRPC3Q13507 836 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 NR1I3Q14994 352 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 SYCP1Q15431 976 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 PTPN21Q16825 1174 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 EXOC3L4Q17RC7 722 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TCTN1Q2MV58 587 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 CBWD6Q4V339 395 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 CBWD3Q5JTY5 395 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 CBWD5Q5RIA9 395 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 GBP6Q6ZN66 633 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 APTXQ7Z2E3 356 aaKnown RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 TMC7Q7Z402 723 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TMC6Q7Z403 805 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 MRPL10Q7Z7H8 261 aaKnown RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 RTN4RL1Q86UN2 441 aaPredicted RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 NT5DC4Q86YG4 428 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 GALNT12Q8IXK2 581 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 EFCAB13Q8IY85 973 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TMEM102Q8N9M5 508 aaPredicted RBP5.71□□□□□ -1.5
LIG3-210ENST00000588109 SPC24Q8NBT2 197 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 BEST2Q8NFU1 509 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 OR5B17Q8NGF7 314 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 URGCPQ8TCY9 931 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 PLEKHO2Q8TD55 490 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 LINC01599Q8WXQ3 324 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 MRFAP1L1Q96HT8 127 aa5.71□□□□□ -1.5
LIG3-210ENST00000588109 TSPAN18Q96SJ8 248 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms