RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 HPS4Q9NQG7 708 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 OLFML3Q9NRN5 406 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 C2orf42Q9NWW7 574 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 CCDC39Q9UFE4 941 aa12.79□□□□□ -0.36
LIG3-209ENST00000586435 TRDMT1O14717 391 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 LDHAP00338 332 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 ADRB1P08588 477 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 GARTP22102 1010 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 BFSP1Q12934 665 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 SRSF5Q13243 272 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 ALCAMQ13740 583 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 RUNX3Q13761 415 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 L1TD1Q5T7N2 865 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 USP49Q70CQ1 688 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 DYMQ7RTS9 669 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 MON1AQ86VX9 555 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 TMEM86AQ8N2M4 240 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 LRRC52Q8N7C0 313 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 USP13Q92995 863 aaPredicted RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 DNAJC19Q96DA6 116 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 CHFRQ96EP1 664 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 TRMT2BQ96GJ1 504 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 EPSTI1Q96J88 318 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 ACBD6Q9BR61 282 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 SMG9Q9H0W8 520 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 IKZF4Q9H2S9 585 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 MRPL44Q9H9J2 332 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 UPF2Q9HAU5 1272 aaKnown RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 GKN1Q9NS71 199 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 TDP1Q9NUW8 608 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 TMLHEQ9NVH6 421 aa12.78□□□□□ -0.36
LIG3-209ENST00000586435 UXTQ9UBK9 157 aaPredicted RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 MORC2Q9Y6X9 1032 aaPredicted RBP12.78□□□□□ -0.36
LIG3-209ENST00000586435 DCDC2BA2VCK2 349 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 ATG13O75143 517 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 PRPF40AO75400 957 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 NOL4O94818 638 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 ITGB3P05106 788 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 POLR2BP30876 1174 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 WNT7BP56706 349 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 AMPD2Q01433 879 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 KCNA1Q09470 495 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 GRSF1Q12849 480 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIG3-209ENST00000586435 INTS6LQ5JSJ4 861 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 HEATR6Q6AI08 1181 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 FSTL4Q6MZW2 842 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 CEP68Q76N32 757 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 PDCL2Q8N4E4 241 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 FAM160A2Q8N612 972 aaPredicted RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 MAB21L3Q8N8X9 362 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 C1orf127Q8N9H9 656 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 CXorf38Q8TB03 319 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 CACTINQ8WUQ7 758 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 MRPS31Q92665 395 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 LOXL4Q96JB6 756 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 MYRFLQ96LU7 910 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 CNTNAP3BQ96NU0 1288 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 ACCSQ96QU6 501 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 PKMYT1Q99640 499 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 FAM213AQ9BRX8 229 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 CNTNAP3Q9BZ76 1288 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 GDAP2Q9NXN4 497 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 FBXO2Q9UK22 296 aaPredicted RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 ITGA11Q9UKX5 1188 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 L1RE1Q9UN81 338 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 CCL26Q9Y258 94 aa12.77□□□□□ -0.37
LIG3-209ENST00000586435 SRPRBQ9Y5M8 271 aaKnown RBP12.77□□□□□ -0.37
LIG3-209ENST00000586435 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 FRMD3A2A2Y4 597 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 OTOL1A6NHN0 477 aaPredicted RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 MYMKA6NI61 221 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 EXTL3O43909 919 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 HUS1O60921 280 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 TADA3O75528 432 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 AKAP3O75969 853 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 PDCP20941 246 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 TXLNAP40222 546 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 GPR15P49685 360 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 LIMK1P53667 647 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 RPL10AP62906 217 aaKnown RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 TFAMQ00059 246 aaKnown RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 MYL7Q01449 175 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 CUL4AQ13619 759 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 PDGFRLQ15198 375 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 CFAP221Q4G0U5 840 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 RRAGBQ5VZM2 374 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 TXNDC8Q6A555 127 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 PKN3Q6P5Z2 889 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 SV2BQ7L1I2 683 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 TOP6BLQ8N6T0 577 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 RIN3Q8TB24 985 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 GAB3Q8WWW8 586 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 FUBP3Q96I24 572 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIG3-209ENST00000586435 PI4K2AQ9BTU6 479 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 EBF3Q9H4W6 596 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 TMEM206Q9H813 350 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 DDX43Q9NXZ2 648 aaKnown RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 RBAKQ9NYW8 714 aaPredicted RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 AGAP1Q9UPQ3 857 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 PCDHB13Q9Y5F0 798 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms