RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 FGFBP2Q9BYJ0 223 aa12.54□□□□□ -0.4
LIG3-207ENST00000586119 ARRDC1-AS1Q9H2J1 176 aa12.54□□□□□ -0.4
LIG3-207ENST00000586119 HSFX1Q9UBD0 423 aa12.54□□□□□ -0.4
LIG3-207ENST00000586119 CLIC4Q9Y696 253 aa12.54□□□□□ -0.4
LIG3-207ENST00000586119 ACACBO00763 2458 aa12.54□□□□□ -0.4
LIG3-207ENST00000586119 MYOFQ9NZM1 2061 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 MAP1BP46821 2468 aaKnown RBP12.53□□□□□ -0.4
LIG3-207ENST00000586119 MYO16Q9Y6X6 1858 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 GOLGA8IPA6NC78 632 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 MYMKA6NI61 221 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 GOLGA8JA6NMD2 632 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 TBCAO75347 108 aaKnown RBP12.53□□□□□ -0.4
LIG3-207ENST00000586119 PRPF40AO75400 957 aaKnown RBP12.53□□□□□ -0.4
LIG3-207ENST00000586119 TADA3O75528 432 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 FGF19O95750 216 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 CYP2F1P24903 491 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 TAF12Q16514 161 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 TMEM196Q5HYL7 178 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 FAM173BQ6P4H8 233 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 KBTBD6Q86V97 674 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 PDCL2Q8N4E4 241 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 TTC16Q8NEE8 873 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 RASSF8Q8NHQ8 419 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 SPPL2BQ8TCT7 592 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 NETO1Q8TDF5 533 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 POMGNT1Q8WZA1 660 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 LARP4BQ92615 738 aaKnown RBP12.53□□□□□ -0.4
LIG3-207ENST00000586119 EZH1Q92800 747 aaPredicted RBP12.53□□□□□ -0.4
LIG3-207ENST00000586119 FAM213AQ9BRX8 229 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 STRA6Q9BX79 667 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 PANK2Q9BZ23 570 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 CCSER1Q9C0I3 900 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 DSEQ9UL01 958 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 AGAP1Q9UPQ3 857 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 SMC3Q9UQE7 1217 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 C2CD2Q9Y426 696 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 KIF3AQ9Y496 699 aa12.53□□□□□ -0.4
LIG3-207ENST00000586119 TRDMT1O14717 391 aaKnown RBP12.52□□□□□ -0.41
LIG3-207ENST00000586119 SLC26A4O43511 780 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 PPP1R37O75864 691 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 ITGB3P05106 788 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 POLR2BP30876 1174 aaKnown RBP12.52□□□□□ -0.41
LIG3-207ENST00000586119 CNR2P34972 360 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 LONP1P36776 959 aaKnown RBP12.52□□□□□ -0.41
LIG3-207ENST00000586119 CASP5P51878 434 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 TFAMQ00059 246 aaKnown RBP12.52□□□□□ -0.41
LIG3-207ENST00000586119 PLCB2Q00722 1185 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 PTPAQ15257 358 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 SLFN12LQ6IEE8 588 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 C1orf228Q6PIY5 440 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 C1orf127Q8N9H9 656 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 CXorf38Q8TB03 319 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 DNAJC19Q96DA6 116 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 GCNAQ96QF7 691 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 ST6GALNAC4Q9H4F1 302 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 PCIF1Q9H4Z3 704 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 TDP1Q9NUW8 608 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 THG1LQ9NWX6 298 aaKnown RBP12.52□□□□□ -0.41
LIG3-207ENST00000586119 GTF3C4Q9UKN8 822 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 L1RE1Q9UN81 338 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 PCDHB5Q9Y5E4 795 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.52□□□□□ -0.41
LIG3-207ENST00000586119 EPG5Q9HCE0 2579 aa12.52□□□□□ -0.41
LIG3-207ENST00000586119 DCLK1O15075 740 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 LRP3O75074 770 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 RNF40O75150 1001 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 ATP2C2O75185 946 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 HOXA6P31267 233 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 AVPR1AP37288 418 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 BFSP1Q12934 665 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 SV2CQ496J9 727 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 LMBRD2Q68DH5 695 aaPredicted RBP12.51□□□□□ -0.41
LIG3-207ENST00000586119 MON1AQ86VX9 555 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 DCP1BQ8IZD4 617 aaKnown RBP12.51□□□□□ -0.41
LIG3-207ENST00000586119 SYNPOQ8N3V7 929 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 KRI1Q8N9T8 703 aaKnown RBP12.51□□□□□ -0.41
LIG3-207ENST00000586119 GAB3Q8WWW8 586 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 HHIPQ96QV1 700 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 PKMYT1Q99640 499 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 LINC00597Q9H2U6 94 aa12.51□□□□□ -0.41
LIG3-207ENST00000586119 MRPL44Q9H9J2 332 aaKnown RBP12.51□□□□□ -0.41
LIG3-207ENST00000586119 DDX43Q9NXZ2 648 aaKnown RBP12.51□□□□□ -0.41
LIG3-207ENST00000586119 KMT2BQ9UMN6 2715 aaPredicted RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 A0A087X0B3 334 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 TM4SF5O14894 197 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 RPP40O75818 363 aaKnown RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 PRPF6O94906 941 aaKnown RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 PAX3P23760 479 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 GJA4P35212 333 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 CEBPZQ03701 1054 aaKnown RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 GRSF1Q12849 480 aaKnown RBP eCLIP12.5□□□□□ -0.41
LIG3-207ENST00000586119 N4BP2L1Q5TBK1 243 aaPredicted RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 BRSK2Q8IWQ3 736 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 CSGALNACT2Q8N6G5 542 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 GLIS3Q8NEA6 775 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 NOC3LQ8WTT2 800 aaKnown RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 C2orf15Q8WU43 125 aaKnown RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 CBWD1Q9BRT8 395 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 PDE11AQ9HCR9 933 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 TRPC7Q9HCX4 862 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms