RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SYBUQ9NX95 663 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 KCTD5Q9NXV2 234 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 OGDHLQ9ULD0 1010 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 GRID2IPA4D2P6 1211 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 DCLK1O15075 740 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 CAND2O75155 1236 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 ATXN1LP0C7T5 689 aaKnown RBP5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 PPP3CBP16298 524 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 KRT4P19013 534 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 CD6P30203 668 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 VIPR2P41587 438 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 PXNP49023 591 aaPredicted RBP5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 ZNF134P52741 427 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 LILRA4P59901 499 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 SLC44A4Q53GD3 710 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 RBM20Q5T481 1227 aaKnown RBP5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 VWA1Q6PCB0 445 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 KSR2Q6VAB6 950 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 TSHZ1Q6ZSZ6 1077 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 MRGPRGQ86SM5 289 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 B3GALNT2Q8NCR0 500 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 TOR1AIP2Q8NFQ8 470 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 LINC00476Q8WZB0 136 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 LPIN2Q92539 896 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 COQ10AQ96MF6 247 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 OSBPL9Q96SU4 736 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 SARGQ9BW04 601 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 TPSD1Q9BZJ3 242 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 NUP62CLQ9H1M0 184 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 SMURF2Q9HAU4 748 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 STK32BQ9NY57 414 aa5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 EPN1Q9Y6I3 576 aaPredicted RBP5.63□□□□□ -1.51
SMCHD1-204ENST00000581226 A0A087WWL8 130 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 FOXN1O15353 648 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 PEX1O43933 1283 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 PQBP1O60828 265 aaKnown RBP5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 RAMP2O60895 175 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 SLPIP03973 132 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 CYP2C9P11712 490 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 XRCC6P12956 609 aaKnown RBP eCLIP5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 TGM1P22735 817 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 SEC24CP53992 1094 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 TBX4P57082 545 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 SATB1Q01826 763 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 DPTQ07507 201 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 MPP3Q13368 585 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 C3orf38Q5JPI3 329 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 HECTD2Q5U5R9 776 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 Q6ZNX1 250 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 LDLRAD3Q86YD5 345 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 AMBRA1Q9C0C7 1298 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 ZNF518BQ9C0D4 1074 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 MS4A7Q9GZW8 240 aaPredicted RBP5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 AFF4Q9UHB7 1163 aaKnown RBP5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 SHOC2Q9UQ13 582 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 MAST3O60307 1309 aa5.62□□□□□ -1.51
SMCHD1-204ENST00000581226 TRIM43BA6NCK2 446 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 TMEM233B4DJY2 109 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 YY2O15391 372 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 ESRRBO95718 433 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 GCP02774 474 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 KRT18P05783 430 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 TRIM27P14373 513 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 MPLP40238 635 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 HNRNPMP52272 730 aaKnown RBP eCLIP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 INHBCP55103 352 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 WNT3P56703 355 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 LOXL3P58215 753 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 TGFB2P61812 414 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 PURAQ00577 322 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 FOXI1Q12951 378 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 SAFBQ15424 915 aaKnown RBP eCLIP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 VPS53Q5VIR6 699 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 SFRP4Q6FHJ7 346 aaPredicted RBP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 SESTD1Q86VW0 696 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 RAPGEF4Q8WZA2 1011 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 MAML1Q92585 1016 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 TRIM43Q96BQ3 446 aaPredicted RBP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 FBXL20Q96IG2 436 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 PGBD1Q96JS3 809 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 NELL2Q99435 816 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 A1CFQ9NQ94 594 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 ZSCAN32Q9NX65 697 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 PACSIN3Q9UKS6 424 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 PAXBP1Q9Y5B6 917 aa5.61□□□□□ -1.51
SMCHD1-204ENST00000581226 PROM1O43490 865 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 RPL17P18621 184 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 FOLR3P41439 243 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 ITIH3Q06033 890 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 DCAF12L1Q5VU92 463 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 ICE2Q659A1 982 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 MICU3Q86XE3 530 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 PJA1Q8NG27 643 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 MYCBPAPQ8TBZ2 947 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 FAM136AQ96C01 138 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 NMD3Q96D46 503 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 SORCS2Q96PQ0 1159 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 MESP1Q9BRJ9 268 aa5.6□□□□□ -1.51
SMCHD1-204ENST00000581226 PTDSS2Q9BVG9 487 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms