RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PTPRRQ15256 657 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 KAZNQ674X7 775 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 SFRP4Q6FHJ7 346 aaPredicted RBP7.89□□□□□ -1.15
SS18-214ENST00000580003 IL31RAQ8NI17 732 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 CAGE1Q8TC20 777 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 FAM136AQ96C01 138 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 SUCLG2Q96I99 432 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 ACTRT3Q9BYD9 372 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 AMBRA1Q9C0C7 1298 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 ATP6V0A4Q9HBG4 840 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 TPCN1Q9ULQ1 816 aa7.89□□□□□ -1.15
SS18-214ENST00000580003 SALL3Q9BXA9 1300 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 A6NNZ2 444 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 BTN3A1O00481 513 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 XRCC6P12956 609 aaKnown RBP eCLIP7.88□□□□□ -1.15
SS18-214ENST00000580003 TYRP1P17643 537 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 PXNP49023 591 aaPredicted RBP7.88□□□□□ -1.15
SS18-214ENST00000580003 SLC11A2P49281 568 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 HNRNPMP52272 730 aaKnown RBP eCLIP7.88□□□□□ -1.15
SS18-214ENST00000580003 ARFIP2P53365 341 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 COL10A1Q03692 680 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 SWSAP1Q6NVH7 229 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 DARS2Q6PI48 645 aaKnown RBP7.88□□□□□ -1.15
SS18-214ENST00000580003 COL23A1Q86Y22 540 aaPredicted RBP7.88□□□□□ -1.15
SS18-214ENST00000580003 DNAJC5GQ8N7S2 189 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 TFAP2BQ92481 460 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 ZG16BQ96DA0 208 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 C11orf21Q9P2W6 132 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 SHOC2Q9UQ13 582 aa7.88□□□□□ -1.15
SS18-214ENST00000580003 CCDC151A5D8V7 595 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 DCLK1O15075 740 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 PARNO95453 639 aaKnown RBP7.87□□□□□ -1.15
SS18-214ENST00000580003 ZBED1O96006 694 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 CYP2C9P11712 490 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 EN2P19622 333 aaPredicted RBP7.87□□□□□ -1.15
SS18-214ENST00000580003 BMP5P22003 454 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 ZNF134P52741 427 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 LILRA4P59901 499 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 KIAA0753Q2KHM9 967 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 SLC44A4Q53GD3 710 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 RNF220Q5VTB9 566 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 KIAA0895LQ68EN5 471 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 CHST15Q7LFX5 561 aaPredicted RBP7.87□□□□□ -1.15
SS18-214ENST00000580003 SLC15A4Q8N697 577 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 FAM156AQ8NDB6 213 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 C22orf23Q9BZE7 217 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 KLC4Q9NSK0 619 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 CHPF2Q9P2E5 772 aa7.87□□□□□ -1.15
SS18-214ENST00000580003 NUDT3O95989 172 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 FAM193AP78312 1265 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 SLC13A2Q13183 592 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 RAB32Q13637 225 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 SMN1Q16637 294 aaKnown RBP7.86□□□□□ -1.15
SS18-214ENST00000580003 PRR16Q569H4 304 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 VPS53Q5VIR6 699 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 STRIP1Q5VSL9 837 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 ICE2Q659A1 982 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 APOA5Q6Q788 366 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 MPP5Q8N3R9 675 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 LRTOMTQ8WZ04 291 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 ANKS1AQ92625 1134 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 PDLIM2Q96JY6 352 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 DUSP26Q9BV47 211 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 PTDSS2Q9BVG9 487 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 RIOX1Q9H6W3 641 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 KIAA1586Q9HCI6 787 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 FOXJ2Q9P0K8 574 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 TLK1Q9UKI8 766 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 PAXBP1Q9Y5B6 917 aa7.86□□□□□ -1.15
SS18-214ENST00000580003 A0A087WWL8 130 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 GOLIM4O00461 696 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 TPP1O14773 563 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 KIAA0355O15063 1070 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 FRS3O43559 492 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 MGEA5O60502 916 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 HRGP04196 525 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 BRAFP15056 766 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 RARRES1P49788 294 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 WNT3P56703 355 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 SIM1P81133 766 aaPredicted RBP7.85□□□□□ -1.15
SS18-214ENST00000580003 CTBP1Q13363 440 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 KRTAP15-1Q3LI76 137 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 FAM109AQ8N4B1 249 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 FKBP10Q96AY3 582 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 ALG8Q9BVK2 526 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 DPH1Q9BZG8 443 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 SYNPO2LQ9H987 977 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 ZSCAN32Q9NX65 697 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 INSL6Q9Y581 213 aa7.85□□□□□ -1.15
SS18-214ENST00000580003 USP19O94966 1318 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 ADGRA2Q96PE1 1338 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 ZAR1LA6NP61 321 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 ISM1B1AKI9 464 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 ADM5C9JUS6 153 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 MYO1FO00160 1098 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 TBX3O15119 743 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 PPIFP30405 207 aaKnown RBP7.84□□□□□ -1.15
SS18-214ENST00000580003 LRPAP1P30533 357 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 GRIA3P42263 894 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 SUMO3P55854 103 aaPredicted RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms