RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 FUT10Q6P4F1 479 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 KCNT2Q6UVM3 1135 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 ANKS3Q6ZW76 656 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 ACOT1Q86TX2 421 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 HERC6Q8IVU3 1022 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 CTNNBL1Q8WYA6 563 aaPredicted RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 CLP1Q92989 425 aaKnown RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 CYFIP2Q96F07 1278 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 IGSF21Q96ID5 467 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 PCDHB18PQ96TA0 734 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 CACNG4Q9UBN1 327 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 HESX1Q9UBX0 185 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 HMGXB4Q9UGU5 601 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 ZMYND8Q9ULU4 1186 aaPredicted RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 RWDD3Q9Y3V2 267 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 ITGB1P05556 798 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 LMO2P25791 158 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 GPC5P78333 572 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 PAN2Q504Q3 1202 aaKnown RBP16.2■□□□□ 0.18
SS18-206ENST00000577572 FAM171BQ6P995 826 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 OSTM1Q86WC4 334 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 RHOT2Q8IXI1 618 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 RNF168Q8IYW5 571 aaPredicted RBP16.2■□□□□ 0.18
SS18-206ENST00000577572 TNS4Q8IZW8 715 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 SLC39A11Q8N1S5 342 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 FIBCD1Q8N539 461 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 ANKRD52Q8NB46 1076 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 MYCBPAPQ8TBZ2 947 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 SYT15Q9BQS2 421 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 ZSWIM1Q9BR11 485 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 ZBED2Q9BTP6 218 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 UBXN6Q9BZV1 441 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 AVENQ9NQS1 362 aaPredicted RBP16.2■□□□□ 0.18
SS18-206ENST00000577572 SPG21Q9NZD8 308 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 LCMT1Q9UIC8 334 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 STRIP2Q9ULQ0 834 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 NME7Q9Y5B8 376 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 PCDHB12Q9Y5F1 795 aa16.2■□□□□ 0.18
SS18-206ENST00000577572 FNDC1Q4ZHG4 1894 aaPredicted RBP16.2■□□□□ 0.18
SS18-206ENST00000577572 KIF5CO60282 957 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 MICAL2O94851 1124 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 CALB1P05937 261 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 PDGFRBP09619 1106 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 ATP2A2P16615 1042 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 SYN1P17600 705 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 MMP8P22894 467 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 ARHGAP25P42331 645 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 BCAT1P54687 386 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 GALCP54803 685 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 HADHBP55084 474 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 GSCP56915 257 aaPredicted RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 NFE2Q16621 373 aaPredicted RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 USP41Q3LFD5 358 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 PKDCCQ504Y2 493 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 INTS6LQ5JSJ4 861 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 SPOUT1Q5T280 376 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 FAM171A1Q5VUB5 890 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 ZNF280DQ6N043 979 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 DCP1BQ8IZD4 617 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 RABGGTAQ92696 567 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 TMEM169Q96HH4 297 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 TTPALQ9BTX7 342 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 TRMT1Q9NXH9 659 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 WDR35Q9P2L0 1181 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 GTF3C4Q9UKN8 822 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 TSPAN16Q9UKR8 245 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 BACE2Q9Y5Z0 518 aa16.19■□□□□ 0.18
SS18-206ENST00000577572 MRPL42Q9Y6G3 142 aaKnown RBP16.19■□□□□ 0.18
SS18-206ENST00000577572 IGFBP6P24592 240 aaPredicted RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 GPD2P43304 727 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 VARS2Q5ST30 1063 aaKnown RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 PPP1R26Q5T8A7 1209 aaPredicted RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 LIN9Q5TKA1 542 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 NAA35Q5VZE5 725 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 C4orf50Q6ZRC1 276 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 NYAP1Q6ZVC0 841 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 DDX53Q86TM3 631 aaKnown RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 PALB2Q86YC2 1186 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 GPIHBP1Q8IV16 184 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 MCOLN2Q8IZK6 566 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 C12orf29Q8N999 325 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 COLGALT1Q8NBJ5 622 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 HASPINQ8TF76 798 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 C2orf15Q8WU43 125 aaKnown RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 RFFLQ8WZ73 363 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 FUBP3Q96I24 572 aaKnown RBP eCLIP16.18■□□□□ 0.18
SS18-206ENST00000577572 HSFY1Q96LI6 401 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 PKMYT1Q99640 499 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 RTP3Q9BQQ7 232 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 PLVAPQ9BX97 442 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 GPR62Q9BZJ7 368 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 MRPL47Q9HD33 250 aaKnown RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 CHST7Q9NS84 486 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 CXXC1Q9P0U4 656 aaPredicted RBP16.18■□□□□ 0.18
SS18-206ENST00000577572 UVRAGQ9P2Y5 699 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 SSX2IPQ9Y2D8 614 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 NCANO14594 1321 aa16.18■□□□□ 0.18
SS18-206ENST00000577572 I3L4J1 428 aa16.17■□□□□ 0.18
SS18-206ENST00000577572 M0QYV0 167 aa16.17■□□□□ 0.18
SS18-206ENST00000577572 TLL1O43897 1013 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms