RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ITPR2Q14571 2701 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 IGHV1OR15-9A0A0B4J2B8 117 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 SMIM28A0A1B0GU29 152 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 OAZ2O95190 189 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 KLF8O95600 359 aaPredicted RBP17.74■□□□□ 0.43
VPS53-218ENST00000575207 CER1O95813 267 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 TMPRSS3P57727 454 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 UBAP2LQ14157 1087 aaKnown RBP17.74■□□□□ 0.43
VPS53-218ENST00000575207 EML3Q32P44 896 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 XKR9Q5GH70 373 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 EOGTQ5NDL2 527 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 RGL4Q8IZJ4 473 aa17.74■□□□□ 0.43
VPS53-218ENST00000575207 SNRNP27Q8WVK2 155 aaKnown RBP17.74■□□□□ 0.43
VPS53-218ENST00000575207 DUS2Q9NX74 493 aaKnown RBP17.74■□□□□ 0.43
VPS53-218ENST00000575207 DAXXQ9UER7 740 aaPredicted RBP17.74■□□□□ 0.43
VPS53-218ENST00000575207 TCRBV21S2A2A0A5A6 115 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 OR4Q2P0C623 313 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 JUPP14923 745 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 DDX6P26196 483 aaKnown RBP eCLIP17.73■□□□□ 0.43
VPS53-218ENST00000575207 MCM5P33992 734 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 HNF1BP35680 557 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 NR1H3Q13133 447 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 MTF1Q14872 753 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 ARHGAP40Q5TG30 622 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 ERICH1Q86X53 443 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 MAB21L3Q8N8X9 362 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 ETNPPLQ8TBG4 499 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 ADPGKQ9BRR6 497 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 HSFX1Q9UBD0 423 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 BTBD3Q9Y2F9 522 aa17.73■□□□□ 0.43
VPS53-218ENST00000575207 HEMK1Q9Y5R4 338 aaPredicted RBP17.73■□□□□ 0.43
VPS53-218ENST00000575207 UTP20O75691 2785 aaKnown RBP17.72■□□□□ 0.43
VPS53-218ENST00000575207 ADAM23O75077 832 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 KRT10P13645 584 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 CR2P20023 1033 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 GNA11P29992 359 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 MATKP42679 507 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 PTH1RQ03431 593 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 PFKFB3Q16875 520 aaPredicted RBP17.72■□□□□ 0.43
VPS53-218ENST00000575207 XKR4Q5GH76 650 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 SYCP2LQ5T4T6 812 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 IL27RAQ6UWB1 636 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 TMEM150AQ86TG1 271 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 ATAD1Q8NBU5 361 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 CPNE5Q9HCH3 593 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 SLC38A7Q9NVC3 462 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 PCDHB8Q9UN66 801 aa17.72■□□□□ 0.43
VPS53-218ENST00000575207 CYP3A7-CYP3A51PA0A087WV96 503 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 A0A1B0GTW7 788 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 MTMR11A4FU01 709 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 ZBTB39O15060 712 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 SOAT2O75908 522 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 CYP3A7P24462 503 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 RPL9P32969 192 aaKnown RBP17.71■□□□□ 0.43
VPS53-218ENST00000575207 ACTN2P35609 894 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 IFNAR2P48551 515 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 PPP2R5CQ13362 524 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 WDR45BQ5MNZ6 344 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 TTC9BQ8N6N2 239 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 FOXJ1Q92949 421 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 LXNQ9BS40 222 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 FAM117AQ9C073 453 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 CALCOCO1Q9P1Z2 691 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.71■□□□□ 0.43
VPS53-218ENST00000575207 PAXBP1Q9Y5B6 917 aa17.71■□□□□ 0.43
VPS53-218ENST00000575207 ZNF638Q14966 1978 aaKnown RBP17.71■□□□□ 0.43
VPS53-218ENST00000575207 MYO18AQ92614 2054 aaKnown RBP17.7■□□□□ 0.42
VPS53-218ENST00000575207 ZNF217O75362 1048 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 GABRG2P18507 467 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 TIE1P35590 1138 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 KIR2DL1P43626 348 aaPredicted RBP17.7■□□□□ 0.42
VPS53-218ENST00000575207 YWHAHQ04917 246 aaPredicted RBP17.7■□□□□ 0.42
VPS53-218ENST00000575207 SUZ12Q15022 739 aaKnown RBP17.7■□□□□ 0.42
VPS53-218ENST00000575207 GAB4Q2WGN9 574 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 HLA-BQ31612 363 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 TBC1D25Q3MII6 688 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 CCDC157Q569K6 752 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 CDCA2Q69YH5 1023 aaPredicted RBP17.7■□□□□ 0.42
VPS53-218ENST00000575207 ALKAL1Q6UXT8 129 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 CCDC12Q8WUD4 166 aaPredicted RBP17.7■□□□□ 0.42
VPS53-218ENST00000575207 DNASE2BQ8WZ79 361 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 LGMNQ99538 433 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 LPIN3Q9BQK8 851 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 OSBPL3Q9H4L5 887 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 NFE2L3Q9Y4A8 694 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 PCDHGA1Q9Y5H4 931 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 WNT6Q9Y6F9 365 aa17.7■□□□□ 0.42
VPS53-218ENST00000575207 SPTBN1Q01082 2364 aaKnown RBP17.69■□□□□ 0.42
VPS53-218ENST00000575207 TLN1Q9Y490 2541 aaKnown RBP17.69■□□□□ 0.42
VPS53-218ENST00000575207 DENND4CQ5VZ89 1909 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 OR6C75A6NL08 312 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 BRINP1O60477 761 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 DGAT1O75907 488 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 AFPP02771 609 aaKnown RBP17.69■□□□□ 0.42
VPS53-218ENST00000575207 MAOBP27338 520 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 MARCKSP29966 332 aaPredicted RBP17.69■□□□□ 0.42
VPS53-218ENST00000575207 MCM4P33991 863 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 BNC1Q01954 994 aa17.69■□□□□ 0.42
VPS53-218ENST00000575207 TARDBPQ13148 414 aaKnown RBP eCLIP17.69■□□□□ 0.42
VPS53-218ENST00000575207 PRPF4BQ13523 1007 aaKnown RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms