RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 FBXW11Q9UKB1 542 aa19.38■□□□□ 0.69
CCDC40-213ENST00000574933 C2orf16Q68DN1 1984 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 ITIH6Q6UXX5 1313 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 TGM5O43548 720 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 NCK2O43639 380 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 VNN2O95498 520 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 GLUD1P00367 558 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 PAEPP09466 180 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 OR4Q2P0C623 313 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 CPB1P15086 417 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 ATF2P15336 505 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 NRIP1P48552 1158 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 RTL10Q7L3V2 364 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 SLC4A11Q8NBS3 891 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 IQCDQ96DY2 449 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 TTYH3Q9C0H2 523 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 GPR88Q9GZN0 384 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 DPEP3Q9H4B8 488 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 CEP72Q9P209 647 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 DENND4CQ5VZ89 1909 aa19.37■□□□□ 0.69
CCDC40-213ENST00000574933 MYBPHLA2RUH7 354 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 MTMR11A4FU01 709 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 PER2O15055 1255 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 ATP2C2O75185 946 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 PAPLNO95428 1278 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 FOSL2P15408 326 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 JAM2P57087 298 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 POLR2FP61218 127 aaKnown RBP19.36■□□□□ 0.69
CCDC40-213ENST00000574933 CTC1Q2NKJ3 1217 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 SLC39A12Q504Y0 691 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 ACOT1Q86TX2 421 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 GLYCTKQ8IVS8 523 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 TCEAL8Q8IYN2 117 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 SPPL2BQ8TCT7 592 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 TMEM176AQ96HP8 235 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 FUBP3Q96I24 572 aaKnown RBP eCLIP19.36■□□□□ 0.69
CCDC40-213ENST00000574933 NUP58Q9BVL2 599 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 PLEKHA4Q9H4M7 779 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 ABCB6Q9NP58 842 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 TMLHEQ9NVH6 421 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 GTF3C4Q9UKN8 822 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 KIAA1257Q9ULG3 409 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 PCDHB4Q9Y5E5 795 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 HCFC2Q9Y5Z7 792 aa19.36■□□□□ 0.69
CCDC40-213ENST00000574933 RNF225M0QZC1 329 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 FOXN3O00409 490 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 TRIM21P19474 475 aaKnown RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 PSMC1P62191 440 aaKnown RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 ADAM15Q13444 863 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 DRAP1Q14919 205 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 ARHGAP44Q17R89 818 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 CFAP221Q4G0U5 840 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 TMEM270Q6UE05 265 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 RNF19BQ6ZMZ0 732 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 C4orf50Q6ZRC1 276 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 RBM23Q86U06 439 aaKnown RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 PALB2Q86YC2 1186 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 FAM71AQ8IYT1 594 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 RBBP8NLQ8NC74 664 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 VN1R2Q8NFZ6 395 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 PCMTD1Q96MG8 357 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-213ENST00000574933 DPP7Q9UHL4 492 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 MYO6Q9UM54 1294 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 NOTCH4Q99466 2003 aa19.35■□□□□ 0.69
CCDC40-213ENST00000574933 GLP2RO95838 553 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 EPCAMP16422 314 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 GTF2F1P35269 517 aaKnown RBP eCLIP19.34■□□□□ 0.69
CCDC40-213ENST00000574933 MAGEA11P43364 429 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 ARPP19P56211 112 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 PTPN21Q16825 1174 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 MDH1BQ5I0G3 518 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 ARHGAP17Q68EM7 881 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 VSTM4Q8IW00 320 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 KREMEN2Q8NCW0 462 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 CASP10Q92851 521 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 PCED1BQ96HM7 432 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 MRFAP1L1Q96HT8 127 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 TRIM5Q9C035 493 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 PCDHB5Q9Y5E4 795 aa19.34■□□□□ 0.69
CCDC40-213ENST00000574933 A0A1W2PQJ5 194 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 F8VZ95 297 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 VDRP11473 427 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 ADCY1Q08828 1119 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 ORC1Q13415 861 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 RAPGEF1Q13905 1077 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 CCDC142Q17RM4 750 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 ZNF394Q53GI3 561 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 PAQR9Q6ZVX9 377 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 FUKQ8N0W3 1084 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 ATAD1Q8NBU5 361 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 BAP1Q92560 729 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 MYLPFQ96A32 169 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 HNRNPABQ99729 332 aaKnown RBP19.33■□□□□ 0.68
CCDC40-213ENST00000574933 LPIN3Q9BQK8 851 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 B3GNT5Q9BYG0 378 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 NLRC4Q9NPP4 1024 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 DZANK1Q9NVP4 752 aa19.33■□□□□ 0.68
CCDC40-213ENST00000574933 SEC24AO95486 1093 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 POU2F2P09086 479 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 HAPLN1P10915 354 aaPredicted RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms