RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PSMD6Q15008 389 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 RASA2Q15283 850 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 DLGAP5Q15398 846 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 TARBP2Q15633 366 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 MUM1Q2TAK8 710 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 PRICKLE4Q2TBC4 344 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 C5orf22Q49AR2 442 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 MFSD4BQ5TF39 518 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 MBLAC2Q68D91 279 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 SULT6B1Q6IMI4 303 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 IRGCQ6NXR0 463 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 DCLRE1AQ6PJP8 1040 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 Q6ZS46 218 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 H1FNTQ75WM6 255 aaPredicted RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 B4GALNT4Q76KP1 1039 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 C16orf59Q7L2K0 433 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 HDXQ7Z353 690 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ADAT2Q7Z6V5 191 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 DAAM2Q86T65 1068 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 NLRP14Q86W24 1093 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 RIOX2Q8IUF8 465 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ZC3H7AQ8IWR0 971 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 LRRC71Q8N4P6 559 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 MSANTD4Q8NCY6 345 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 IL17RDQ8NFM7 739 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 OR2I1PQ8NGU4 316 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 DNAJB8Q8NHS0 232 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 FAM71BQ8TC56 605 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 SH3RF2Q8TEC5 729 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 DLG3Q92796 817 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 BHMTQ93088 406 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 EAF2Q96CJ1 260 aaPredicted RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 MRGPRX1Q96LB2 322 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 C16orf92Q96LL3 132 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 MFSD14AQ96MC6 490 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ALPK1Q96QP1 1244 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 HNRNPABQ99729 332 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 PYM1Q9BRP8 204 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 STRA6Q9BX79 667 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 UBE2OQ9C0C9 1292 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 TAOK3Q9H2K8 898 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 RANBP17Q9H2T7 1088 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 LIN28AQ9H9Z2 209 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 TMEM8AQ9HCN3 771 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ZDHHC7Q9NXF8 308 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ADD3Q9UEY8 706 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 PCDHGB4Q9UN71 923 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 GPR55Q9Y2T6 319 aaPredicted RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 NOC2LQ9Y3T9 749 aaKnown RBP3.32□□□□□ -1.88
VPS35-209ENST00000568642 PCDHB1Q9Y5F3 818 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 FHOD1Q9Y613 1164 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ZNF541Q9H0D2 1346 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 NSD2O96028 1365 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ANKRD36BQ8N2N9 1353 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 CCDC7Q96M83 1385 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 PLEKHH1Q9ULM0 1364 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 CEP162Q5TB80 1403 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 ANKARQ7Z5J8 1434 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 C2CD3Q4AC94 2353 aa3.32□□□□□ -1.88
VPS35-209ENST00000568642 PLXNA3P51805 1871 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 MAP2P11137 1827 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 ITGB4P16144 1822 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ARFGEF2Q9Y6D5 1785 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 COL4A3Q01955 1670 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 COL2A1P02458 1487 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 hCG_1807616A0A1W2PRN6 198 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 LRRC14BA6NHZ5 514 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 GOLGA6L6A8MZA4 724 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 B4DLN1 442 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 H3BNC9 293 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 NOP56O00567 594 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 MGEA5O60502 916 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 B3GALNT1O75752 331 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 DGKIO75912 1065 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 RGS9O75916 674 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 DLGAP3O95886 979 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 TPM2P07951 284 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 GLI1P08151 1106 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CLEC2LP0C7M8 214 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 TMEM253P0C7T8 217 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 IFNAR1P17181 557 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 JUNBP17275 347 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 PTPN2P17706 415 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 EPHA1P21709 976 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CST5P28325 142 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 AFMP43652 599 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 AFF3P51826 1226 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 KIF11P52732 1056 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CLNS1AP54105 237 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 PRKAA2P54646 552 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CSE1LP55060 971 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 JAM2P57087 298 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 NLRP12P59046 1061 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 PPARDQ03181 441 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 SCRN1Q12765 414 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 PAK1Q13153 545 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 MAPK7Q13164 816 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 NEUROD1Q13562 356 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 IL10RAQ13651 578 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 IKBKEQ14164 716 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms