RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KHDC1LQ5JSQ8 128 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 KLHDC4Q8TBB5 520 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 ASPSCR1Q9BZE9 553 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 BRINP2Q9C0B6 783 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 SH3BP4Q9P0V3 963 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 RNF7Q9UBF6 113 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 SHOC2Q9UQ13 582 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 ANKRD6Q9Y2G4 727 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 PLEKHM1Q9Y4G2 1056 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 VWC2LB2RUY7 222 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 OFD1O75665 1012 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 THP07101 528 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 CELA2AP08217 269 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 ELFN1P0C7U0 828 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 PIM1P11309 404 aaPredicted RBP3.68□□□□□ -1.82
VPS35-207ENST00000568191 ITPKBP27987 946 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 PPIFP30405 207 aaKnown RBP3.68□□□□□ -1.82
VPS35-207ENST00000568191 CYP2C18P33260 490 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 MAP2K6P52564 334 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 EEFSECP57772 596 aaKnown RBP3.68□□□□□ -1.82
VPS35-207ENST00000568191 EIF2B5Q13144 721 aaKnown RBP3.68□□□□□ -1.82
VPS35-207ENST00000568191 TMEM119Q4V9L6 283 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 SLC44A4Q53GD3 710 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 PCID2Q5JVF3 399 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 EMC10Q5UCC4 262 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 PPP1R32Q7Z5V6 425 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 LRRC71Q8N4P6 559 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 PCSK9Q8NBP7 692 aaKnown RBP3.68□□□□□ -1.82
VPS35-207ENST00000568191 ANKS1AQ92625 1134 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 C1GALT1C1Q96EU7 318 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 MVB12AQ96EY5 273 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 SLC35A4Q96G79 324 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 NAF1Q96HR8 494 aaKnown RBP3.68□□□□□ -1.82
VPS35-207ENST00000568191 SLC46A1Q96NT5 459 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 PTDSS2Q9BVG9 487 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 TTYH3Q9C0H2 523 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 GLOD4Q9HC38 313 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 AASDHPPTQ9NRN7 309 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 ZSCAN32Q9NX65 697 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 HESX1Q9UBX0 185 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 AOX1Q06278 1338 aa3.68□□□□□ -1.82
VPS35-207ENST00000568191 WDR91A4D1P6 747 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PRSS29PA6NIE9 313 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PPM1DO15297 605 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 ZRANB2O95218 330 aaKnown RBP eCLIP3.67□□□□□ -1.82
VPS35-207ENST00000568191 AHSGP02765 367 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 GRPP07492 148 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 NPSP0C0P6 89 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 KELP23276 732 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 LRPAP1P30533 357 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PLCD1P51178 756 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 SOX8P57073 446 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PROK1P58294 105 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 ANAPC15P60006 121 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PTPROQ16827 1216 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 MTX3Q5HYI7 312 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 TREML2Q5T2D2 321 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 VPS53Q5VIR6 699 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 MTHFD1LQ6UB35 978 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PARS2Q7L3T8 475 aaKnown RBP3.67□□□□□ -1.82
VPS35-207ENST00000568191 PPP1R3BQ86XI6 285 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 FAM109AQ8N4B1 249 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 DDB2Q92466 427 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 PIH1D1Q9NWS0 290 aaKnown RBP3.67□□□□□ -1.82
VPS35-207ENST00000568191 DKK3Q9UBP4 350 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 AGAP1Q9UPQ3 857 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 NOP58Q9Y2X3 529 aaKnown RBP3.67□□□□□ -1.82
VPS35-207ENST00000568191 SETD1BQ9UPS6 1966 aaKnown RBP3.67□□□□□ -1.82
VPS35-207ENST00000568191 ZNF804BA4D1E1 1349 aa3.67□□□□□ -1.82
VPS35-207ENST00000568191 ARHGEF17Q96PE2 2063 aaPredicted RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 LOC105371045A0A1W2PR82 267 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 E2F8A0AVK6 867 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 UNC5CO95185 931 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 PRKCBP05771 671 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 PTGER1P34995 402 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 VIPR2P41587 438 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 TPTEP56180 551 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 TUBA4AP68366 448 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 HOXA4Q00056 320 aaPredicted RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 EXOSC9Q06265 439 aaKnown RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 FGL2Q14314 439 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 PLS1Q14651 629 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 CERKLQ49MI3 558 aaPredicted RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 BRDTQ58F21 947 aaPredicted RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 ARHGAP40Q5TG30 622 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 CATIPQ7Z7H3 387 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 GRAMD1CQ8IYS0 662 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 VGLL2Q8N8G2 317 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 ABHD11Q8NFV4 315 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 RP9Q8TA86 221 aaKnown RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 SCARB1Q8WTV0 552 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 DPF1Q92782 380 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 DPCDQ9BVM2 203 aaPredicted RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 C1QTNF7Q9BXJ2 289 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 WDR26Q9H7D7 661 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 TCF7L1Q9HCS4 588 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 TRMT13Q9NUP7 481 aaKnown RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 TFCP2L1Q9NZI6 479 aa3.66□□□□□ -1.82
VPS35-207ENST00000568191 ZNF70Q9UC06 446 aaPredicted RBP3.66□□□□□ -1.82
VPS35-207ENST00000568191 IP6K2Q9UHH9 426 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms