RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 C7orf61Q8IZ16 206 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 BADQ92934 168 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 ALS2CR12Q96Q35 445 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 HNRNPABQ99729 332 aaKnown RBP14.77□□□□□ -0.05
CLK3-209ENST00000562670 SYT15Q9BQS2 421 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 OXCT2Q9BYC2 517 aaPredicted RBP14.77□□□□□ -0.05
CLK3-209ENST00000562670 MIS12Q9H081 205 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 THAP2Q9H0W7 228 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 DPEP3Q9H4B8 488 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 CWH43Q9H720 699 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 DDX43Q9NXZ2 648 aaKnown RBP14.77□□□□□ -0.05
CLK3-209ENST00000562670 TSPAN16Q9UKR8 245 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 STRIP2Q9ULQ0 834 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 TFR2Q9UP52 801 aa14.77□□□□□ -0.05
CLK3-209ENST00000562670 MKI67P46013 3256 aaKnown RBP14.77□□□□□ -0.05
CLK3-209ENST00000562670 PTPRSQ13332 1948 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 TMCO5BA8MYB1 307 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 M0QYV0 167 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 FGBP02675 491 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 PTPN1P18031 435 aaKnown RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 LMO2P25791 158 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 GPD2P43304 727 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 GNG11P61952 73 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 HTRA4P83105 476 aaPredicted RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 PLCB3Q01970 1234 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 ORC1Q13415 861 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 MAPRE1Q15691 268 aaKnown RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 PPP1R26Q5T8A7 1209 aaPredicted RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 LIN9Q5TKA1 542 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 OVOS1Q6IE37 1185 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 DENND1BQ6P3S1 775 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 C16orf59Q7L2K0 433 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 PASD1Q8IV76 773 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 RNF168Q8IYW5 571 aaPredicted RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 WDTC1Q8N5D0 677 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 ANKRD52Q8NB46 1076 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 C1orf131Q8NDD1 294 aaKnown RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 HERVK_113Q902F9 699 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 ZNF653Q96CK0 615 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 PKMYT1Q99640 499 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 RTP3Q9BQQ7 232 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 ADAM22Q9P0K1 906 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 HESX1Q9UBX0 185 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 LCMT1Q9UIC8 334 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 SALL4Q9UJQ4 1053 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 FAN1Q9Y2M0 1017 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 PRG3Q9Y2Y8 225 aaPredicted RBP14.76□□□□□ -0.05
CLK3-209ENST00000562670 SCINQ9Y6U3 715 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 DUSP10Q9Y6W6 482 aa14.76□□□□□ -0.05
CLK3-209ENST00000562670 MACROD2A1Z1Q3 448 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 TADA2AO75478 443 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 ACRP10323 421 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 LAG3P18627 525 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 ABCB4P21439 1286 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 FGFR3P22607 806 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 GABRB2P47870 512 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 RPL34P49207 117 aaKnown RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 BCAR1P56945 870 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 YWHAHQ04917 246 aaPredicted RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 BST2Q10589 180 aaKnown RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 PDCLQ13371 301 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 GOLGA7BQ2TAP0 167 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 PAN2Q504Q3 1202 aaKnown RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 INTS6LQ5JSJ4 861 aaKnown RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 TMEM240Q5SV17 173 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 PLEKHA7Q6IQ23 1121 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 FUT10Q6P4F1 479 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 FAM171BQ6P995 826 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 TTC30AQ86WT1 665 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 THEM5Q8N1Q8 247 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 C12orf29Q8N999 325 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 KIF18AQ8NI77 898 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 MYCBPAPQ8TBZ2 947 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 PHOSPHO2Q8TCD6 241 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 HASPINQ8TF76 798 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 CPA5Q8WXQ8 436 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 RABGGTAQ92696 567 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 ARHGEF26Q96DR7 871 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 ABHD8Q96I13 439 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 WDR24Q96S15 920 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 SLC9A7Q96T83 725 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 IRX2Q9BZI1 471 aaPredicted RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 MTIF3Q9H2K0 278 aaKnown RBP14.75□□□□□ -0.05
CLK3-209ENST00000562670 WDR35Q9P2L0 1181 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 STK39Q9UEW8 545 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 CAPN6Q9Y6Q1 641 aa14.75□□□□□ -0.05
CLK3-209ENST00000562670 F8W810 466 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 UPP2O95045 317 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 GJB5O95377 273 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 PDGFRBP09619 1106 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 ALDH7A1P49419 539 aaKnown RBP14.74□□□□□ -0.05
CLK3-209ENST00000562670 SNX16P57768 344 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 TSPY1Q01534 308 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 TAP1Q03518 808 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 MRPL58Q14197 206 aaKnown RBP14.74□□□□□ -0.05
CLK3-209ENST00000562670 PTPN20Q4JDL3 420 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 ZNF569Q5MCW4 686 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 C11orf63Q6NUN7 778 aa14.74□□□□□ -0.05
CLK3-209ENST00000562670 SYT10Q6XYQ8 523 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms