RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PLEKHA7Q6IQ23 1121 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 DSTYKQ6XUX3 929 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 CPNE8Q86YQ8 564 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 HES6Q96HZ4 224 aa22.54■■□□□ 1.2
CLN3-209ENST00000561689 TIMM13Q9Y5L4 95 aaPredicted RBP22.54■■□□□ 1.2
CLN3-209ENST00000561689 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.54■■□□□ 1.2
CLN3-209ENST00000561689 WARSP23381 471 aaKnown RBP22.53■■□□□ 1.2
CLN3-209ENST00000561689 ERCC6LQ2NKX8 1250 aa22.53■■□□□ 1.2
CLN3-209ENST00000561689 HASPINQ8TF76 798 aa22.53■■□□□ 1.2
CLN3-209ENST00000561689 CPXM1Q96SM3 734 aa22.53■■□□□ 1.2
CLN3-209ENST00000561689 PARVAQ9NVD7 372 aa22.53■■□□□ 1.2
CLN3-209ENST00000561689 CTAGE15A4D2H0 777 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 EFCAB8A8MWE9 144 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 I3L4J1 428 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 INPPL1O15357 1258 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 CTAGE8P0CG41 777 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 CTAGE6Q86UF2 777 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 ZNF280BQ86YH2 543 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 CTAGE4Q8IX94 777 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 CRYBG2Q8N1P7 616 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 DDX27Q96GQ7 796 aaKnown RBP22.52■■□□□ 1.2
CLN3-209ENST00000561689 PAWRQ96IZ0 340 aaKnown RBP22.52■■□□□ 1.2
CLN3-209ENST00000561689 MRPL47Q9HD33 250 aaKnown RBP22.52■■□□□ 1.2
CLN3-209ENST00000561689 ACAT1P24752 427 aaKnown RBP22.52■■□□□ 1.2
CLN3-209ENST00000561689 TIGD5Q53EQ6 642 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 NOMO2Q5JPE7 1267 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 C1orf53Q5VUE5 145 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 DEFB128Q7Z7B8 93 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 SYNCQ9H7C4 482 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 TMEM161AQ9NX61 479 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 SCINQ9Y6U3 715 aa22.52■■□□□ 1.2
CLN3-209ENST00000561689 F8W810 466 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 B4GALT3O60512 393 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 ATP2C2O75185 946 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 PFKMP08237 780 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 CCDC130P13994 396 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 PSMC1P62191 440 aaKnown RBP22.51■■□□□ 1.19
CLN3-209ENST00000561689 CKAP4Q07065 602 aaKnown RBP22.51■■□□□ 1.19
CLN3-209ENST00000561689 PDCLQ13371 301 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 STILQ15468 1287 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 TEX35Q5T0J7 233 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 UBXN4Q92575 508 aa22.51■■□□□ 1.19
CLN3-209ENST00000561689 MYO1FO00160 1098 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 GABRDO14764 452 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 DDX3YO15523 660 aaKnown RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 DDHD2O94830 711 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 ERBB2P04626 1255 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 HSPA1AP0DMV8 641 aaKnown RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 HSPA1BP0DMV9 641 aaKnown RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 CTCFP49711 727 aaPredicted RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 CDR1P51861 262 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 RNASE9P60153 205 aaKnown RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 RPL7AP62424 266 aaKnown RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 ELF2Q15723 593 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 CCDC142Q17RM4 750 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 CCDC181Q5TID7 509 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 DNAJC24Q6P3W2 148 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 CD300LGQ6UXG3 332 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 TTC30AQ86WT1 665 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 URGCPQ8TCY9 931 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 APBB2Q92870 758 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 C18orf8Q96DM3 657 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 ST7Q9NRC1 585 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 PCDHB7Q9Y5E2 793 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 TCRBV5S1A1TA0A578 114 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 SPOPO43791 374 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 ITGB1P05556 798 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 ADORA2BP29275 332 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 BRCC3P46736 316 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 AARSP49588 968 aaKnown RBP eCLIP22.5■■□□□ 1.19
CLN3-209ENST00000561689 B3GALNT2Q8NCR0 500 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 FEZF2Q8TBJ5 459 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 GOLGA1Q92805 767 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 TNIP3Q96KP6 325 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 UROC1Q96N76 676 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 C11orf49Q9H6J7 331 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 TMEM39AQ9NV64 488 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 TBC1D13Q9NVG8 400 aa22.5■■□□□ 1.19
CLN3-209ENST00000561689 DDX43Q9NXZ2 648 aaKnown RBP22.5■■□□□ 1.19
CLN3-209ENST00000561689 GOLGA8SH3BPF8 625 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 TULP2O00295 520 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 PIK3R2O00459 728 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 RNASELQ05823 741 aaKnown RBP22.49■■□□□ 1.19
CLN3-209ENST00000561689 ARHGAP17Q68EM7 881 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 RSRC2Q7L4I2 434 aaKnown RBP22.49■■□□□ 1.19
CLN3-209ENST00000561689 SLC2A14Q8TDB8 520 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 KRT35Q92764 455 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 HESX1Q9UBX0 185 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 TBX21Q9UL17 535 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 STRIP2Q9ULQ0 834 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 RRP9O43818 475 aaKnown RBP22.49■■□□□ 1.19
CLN3-209ENST00000561689 CXCL10P02778 98 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 RGS7P49802 495 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 GATMP50440 423 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 LRRC26Q2I0M4 334 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 PKDCCQ504Y2 493 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 TMEM86AQ8N2M4 240 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 ANKLE1Q8NAG6 615 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 ALG3Q92685 438 aa22.49■■□□□ 1.19
CLN3-209ENST00000561689 MCEEQ96PE7 176 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms