RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 FRMD3A2A2Y4 597 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 MYBPHLA2RUH7 354 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 HCRTO43612 131 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 PRPF6O94906 941 aaKnown RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 ITGB3P05106 788 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 HMGA1P17096 107 aaKnown RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 ACAT1P24752 427 aaKnown RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 CDC25CP30307 473 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 STAT6P42226 847 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 CXCL12P48061 93 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 CCR3P51677 355 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 MLLT6P55198 1093 aaPredicted RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 SLC39A14Q15043 492 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 PON2Q15165 354 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 RSPO4Q2I0M5 234 aaPredicted RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 ARHGAP29Q52LW3 1261 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 CCDC73Q6ZRK6 1079 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 DGLUCYQ7Z3D6 616 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 PDILTQ8N807 584 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 GLIS3Q8NEA6 775 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 CXorf38Q8TB03 319 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 SPPL2BQ8TCT7 592 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 BPIFB1Q8TDL5 484 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 NOC3LQ8WTT2 800 aaKnown RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 C2orf15Q8WU43 125 aaKnown RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 HPS3Q969F9 1004 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 ZNF560Q96MR9 790 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 PI4K2AQ9BTU6 479 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 FAM126AQ9BYI3 521 aaPredicted RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 C8orf33Q9H7E9 229 aaPredicted RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 PDE11AQ9HCR9 933 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 OLFML3Q9NRN5 406 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 PANK4Q9NVE7 773 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 OBP2AQ9NY56 170 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 RBAKQ9NYW8 714 aaPredicted RBP12.53□□□□□ -0.4
USP3-220ENST00000561381 L1RE1Q9UN81 338 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 CCL26Q9Y258 94 aa12.53□□□□□ -0.4
USP3-220ENST00000561381 CHURC1-FNTBB4DL54 471 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 F11P03951 625 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 GARTP22102 1010 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 TGM1P22735 817 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 WEE1P30291 646 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 PNPLA4P41247 253 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 FNTBP49356 437 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 NLRP12P59046 1061 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 SMARCB1Q12824 385 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 BFSP1Q12934 665 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 SRSF5Q13243 272 aaKnown RBP12.52□□□□□ -0.41
USP3-220ENST00000561381 PUM1Q14671 1186 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP3-220ENST00000561381 TAF12Q16514 161 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 LMBRD2Q68DH5 695 aaPredicted RBP12.52□□□□□ -0.41
USP3-220ENST00000561381 OSTM1Q86WC4 334 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 RALGPS2Q86X27 583 aaPredicted RBP12.52□□□□□ -0.41
USP3-220ENST00000561381 NT5DC4Q86YG4 428 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 DCP1BQ8IZD4 617 aaKnown RBP12.52□□□□□ -0.41
USP3-220ENST00000561381 SYCP3Q8IZU3 236 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 CMTM8Q8IZV2 173 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 SPEM1Q8N4L4 309 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 CSGALNACT2Q8N6G5 542 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 MAB21L3Q8N8X9 362 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 RIN3Q8TB24 985 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 MSANTD3Q96H12 275 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 GCNAQ96QF7 691 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 IER2Q9BTL4 223 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 MTMR12Q9C0I1 747 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 PARD6AQ9NPB6 346 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 DLL3Q9NYJ7 618 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 SIX4Q9UIU6 781 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 MAGED2Q9UNF1 606 aaPredicted RBP12.52□□□□□ -0.41
USP3-220ENST00000561381 PCDHB5Q9Y5E4 795 aa12.52□□□□□ -0.41
USP3-220ENST00000561381 KIF26AQ9ULI4 1882 aaPredicted RBP12.52□□□□□ -0.41
USP3-220ENST00000561381 DENND4CQ5VZ89 1909 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 OTOL1A6NHN0 477 aaPredicted RBP12.51□□□□□ -0.41
USP3-220ENST00000561381 K7ESF4 209 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 HRO43593 1189 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 EXTL3O43909 919 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 PRPF40AO75400 957 aaKnown RBP12.51□□□□□ -0.41
USP3-220ENST00000561381 TADA3O75528 432 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 KRT19P08727 400 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 CYP2F1P24903 491 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 NRLP54845 237 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 TSPY1Q01534 308 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 LRRC32Q14392 662 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 PPP2R5DQ14738 602 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 DDR2Q16832 855 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 TXNDC8Q6A555 127 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 HEATR6Q6AI08 1181 aaKnown RBP12.51□□□□□ -0.41
USP3-220ENST00000561381 TRIM68Q6AZZ1 485 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 CELF5Q8N6W0 485 aaKnown RBP12.51□□□□□ -0.41
USP3-220ENST00000561381 USP13Q92995 863 aaPredicted RBP12.51□□□□□ -0.41
USP3-220ENST00000561381 PKMYT1Q99640 499 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 HPS4Q9NQG7 708 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 GKN1Q9NS71 199 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 DDX43Q9NXZ2 648 aaKnown RBP12.51□□□□□ -0.41
USP3-220ENST00000561381 GTF3C4Q9UKN8 822 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 SNX9Q9Y5X1 595 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 PTPRJQ12913 1337 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 DNAH14Q0VDD8 3507 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 CACNA1AO00555 2505 aa12.51□□□□□ -0.41
USP3-220ENST00000561381 HUS1O60921 280 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms