RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 KCMF1Q9P0J7 381 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 FBXO10Q9UK96 956 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 ADAMTS5Q9UNA0 930 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 STX8Q9UNK0 236 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 MRFAP1Q9Y605 127 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 NUMBLQ9Y6R0 609 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 MYPNQ86TC9 1320 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 MYH8P13535 1937 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 PDHXO00330 501 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 WDR46O15213 610 aaKnown RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 PLA2G6O60733 806 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 CNMDO75829 334 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 PCDH8O95206 1070 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 KNG1P01042 644 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 LPLP06858 475 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 PDHBP11177 359 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 ZKSCAN1P17029 563 aaPredicted RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 RPS6KB1P23443 525 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 RPL13P26373 211 aaKnown RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 MCM5P33992 734 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 ADCY8P40145 1251 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 LIFRP42702 1097 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 RAP1GAPP47736 663 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 EPHB1P54762 984 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 LINC00310P59036 64 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 MAP2K1Q02750 393 aaPredicted RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 GRM1Q13255 1194 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 CRHR2Q13324 411 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 TOB2Q14106 344 aaPredicted RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 KRT32Q14532 448 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 KCNA10Q16322 511 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 PITRM1Q5JRX3 1037 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 GRAMD4Q6IC98 578 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 C17orf99Q6UX52 265 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 BTNL9Q6UXG8 535 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 IQCA1Q86XH1 822 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 SPICE1Q8N0Z3 855 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 RAX2Q96IS3 184 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 FAXDC2Q96IV6 333 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 TCEANC2Q96MN5 208 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 JAKMIP1Q96N16 626 aaKnown RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 NUP88Q99567 741 aaPredicted RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 LRRC2Q9BYS8 371 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 QRSL1Q9H0R6 528 aaKnown RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 RPAP3Q9H6T3 665 aaPredicted RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 TXNRD2Q9NNW7 524 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 CCM2LQ9NUG4 571 aaPredicted RBP6.89□□□□□ -1.31
LRRC28-220ENST00000561253 FBXO28Q9NVF7 368 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 NTMQ9P121 344 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 FTSJ1Q9UET6 329 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 EDARQ9UNE0 448 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 NID2Q14112 1375 aa6.89□□□□□ -1.31
LRRC28-220ENST00000561253 A0A0G2JMZ2 1700 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 IFIT3O14879 490 aaKnown RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 FOXN1O15353 648 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 TLR2O60603 784 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 OPHN1O60890 802 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 MAFO75444 373 aaPredicted RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 PFKMP08237 780 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 RBP3P10745 1247 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 CTGFP29279 349 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 MCL1Q07820 350 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 ZNF543Q08ER8 600 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 TRDNQ13061 729 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 DGKDQ16760 1214 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 CCDC178Q5BJE1 867 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 PRR31Q5SQ13 230 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 FAM83BQ5T0W9 1011 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 SLFN13Q68D06 897 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 GADL1Q6ZQY3 521 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 RALYLQ86SE5 291 aaKnown RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 ZCCHC14Q8WYQ9 949 aaKnown RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 HIST1H2AHQ96KK5 128 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 P2RX7Q99572 595 aaKnown RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 HIST1H2AJQ99878 128 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 UPF3BQ9BZI7 483 aaKnown RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 SLC13A1Q9BZW2 595 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 PITHD1Q9GZP4 211 aaPredicted RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 ALDH8A1Q9H2A2 487 aaPredicted RBP6.88□□□□□ -1.31
LRRC28-220ENST00000561253 SH2D4AQ9H788 454 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 MORF4L1Q9UBU8 362 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 TCEAL9Q9UHQ7 104 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 MAD2L2Q9UI95 211 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 USP18Q9UMW8 372 aa6.88□□□□□ -1.31
LRRC28-220ENST00000561253 PARP14Q460N5 1801 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 ZNF536O15090 1300 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 A0A0G2JNJ9 132 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 NPIPB6E9PJ23 425 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 DDX3XO00571 662 aaKnown RBP eCLIP6.87□□□□□ -1.31
LRRC28-220ENST00000561253 XPOTO43592 962 aaKnown RBP6.87□□□□□ -1.31
LRRC28-220ENST00000561253 CYTH3O43739 400 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 SNUPNO95149 360 aaKnown RBP6.87□□□□□ -1.31
LRRC28-220ENST00000561253 HSPA1AP0DMV8 641 aaKnown RBP6.87□□□□□ -1.31
LRRC28-220ENST00000561253 HSPA1BP0DMV9 641 aaKnown RBP6.87□□□□□ -1.31
LRRC28-220ENST00000561253 HSPA8P11142 646 aaKnown RBP6.87□□□□□ -1.31
LRRC28-220ENST00000561253 COL6A1P12109 1028 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 MTHFD2P13995 350 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 ZNF28P17035 718 aa6.87□□□□□ -1.31
LRRC28-220ENST00000561253 CASTP20810 708 aaKnown RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms