RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 DNAJC3Q13217 504 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 BAATQ14032 418 aaPredicted RBP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 EMC2Q15006 297 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 FAM182BQ5T319 152 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 IL31Q6EBC2 164 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 GPAT2Q6NUI2 795 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 UGT3A1Q6NUS8 523 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 NYAP1Q6ZVC0 841 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 ATG9AQ7Z3C6 839 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 TTC30AQ86WT1 665 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 SYBUQ9NX95 663 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 SAMD9LQ8IVG5 1584 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 RSPH10B2B2RC85 870 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 RSPH10BP0C881 870 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 TCN1P20061 433 aaPredicted RBP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 POU4F1Q01851 419 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 AGAP9Q5VTM2 703 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 OPTNQ96CV9 577 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 SLC39A10Q9ULF5 831 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 POLRMTO00411 1230 aaKnown RBP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 STRNO43815 780 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 TRIM16LQ309B1 348 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 IER5Q5VY09 327 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 MARCH10Q8NA82 808 aaPredicted RBP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 STKLD1Q8NE28 680 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 RSPH1Q8WYR4 309 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 OTUD5Q96G74 571 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 CNPY3Q9BT09 278 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 CELF4Q9BZC1 486 aaKnown RBP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 L2HGDHQ9H9P8 463 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 NMRK1Q9NWW6 199 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 CLCA2Q9UQC9 943 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 TSC22D4Q9Y3Q8 395 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 SPATA31A3Q5VYP0 1347 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 FAM205CA6NFA0 338 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 PSTPIP1O43586 416 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 UBTFL6P0CB48 400 aaPredicted RBP13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 DSG1Q02413 1049 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 ZCWPW2Q504Y3 356 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 SYCP2LQ5T4T6 812 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 OLFML2BQ68BL8 750 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 CYB5D1Q6P9G0 228 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 HES6Q96HZ4 224 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 BRD8Q9H0E9 1235 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 EPS8L2Q9H6S3 715 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 DCDC2Q9UHG0 476 aa13.74□□□□□ -0.21
CSPG4P11-201ENST00000560634 TADA2AO75478 443 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 SERPIND1P05546 499 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 HIST2H2ACQ16777 129 aaPredicted RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 CCDC142Q17RM4 750 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 HIST2H2AA3Q6FI13 130 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 DENND1BQ6P3S1 775 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 TRIM65Q6PJ69 517 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 SNX31Q8N9S9 440 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 IPMKQ8NFU5 416 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 OR6J1Q8NGC5 347 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 AGBL1Q96MI9 1066 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 ZFP42Q96MM3 310 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 ZSWIM1Q9BR11 485 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 MRPS26Q9BYN8 205 aaKnown RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 NDEL1Q9GZM8 345 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 A2ML1A8K2U0 1454 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 O00370 1275 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 STK25O00506 426 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 WBP4O75554 376 aaKnown RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 RARGP13631 454 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 C4BPBP20851 252 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 PNPLA4P41247 253 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 MROH9Q5TGP6 573 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 ACAD10Q6JQN1 1059 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 YAF2Q8IY57 180 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 TERB1Q8NA31 727 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 TPCN2Q8NHX9 752 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 USP13Q92995 863 aaPredicted RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 TIMM44O43615 452 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 PGK2P07205 417 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 CCDC60Q8IWA6 550 aaPredicted RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 LRRC34Q8IZ02 419 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 BBS2Q9BXC9 721 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 DCLRE1BQ9H816 532 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 ATF5Q9Y2D1 282 aaPredicted RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 SLCO1B7G3V0H7 640 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 RHOBTB1O94844 696 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 CHRM3P20309 590 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 ANXA11P50995 505 aaKnown RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 HMGCS2P54868 508 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 ATF7IP2Q5U623 682 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 TRAF7Q6Q0C0 670 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 NLRP9Q7RTR0 991 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 MYCBPAPQ8TBZ2 947 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 GPR63Q9BZJ6 419 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 NAGPAQ9UK23 515 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 PHTF1Q9UMS5 762 aa13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 EIF3LQ9Y262 564 aaKnown RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.73□□□□□ -0.21
CSPG4P11-201ENST00000560634 HEATR9A2RTY3 570 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 GH1P01241 217 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 PTPN7P35236 360 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms