RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 PON1P27169 355 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 LTBRP36941 435 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 EPHB3P54753 998 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 SLC8A3P57103 927 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 SMAD4Q13485 552 aaKnown RBP12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 VEPH1Q14D04 833 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 SLC39A12Q504Y0 691 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 IQCEQ6IPM2 695 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 SPOPLQ6IQ16 392 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 LLGL2Q6P1M3 1020 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 RSPO2Q6UXX9 243 aaPredicted RBP12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 EP400NLQ6ZTU2 488 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 GPR149Q86SP6 731 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 GLYCTKQ8IVS8 523 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 SMRP1Q8NCR6 262 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 FAM84AQ96KN4 292 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 ERGIC2Q96RQ1 377 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 RTP3Q9BQQ7 232 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 MRPL45Q9BRJ2 306 aaKnown RBP12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 PI4K2AQ9BTU6 479 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 VPS16Q9H269 839 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 SMYD3Q9H7B4 428 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 CYP4F11Q9HBI6 524 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 APOBEC3GQ9HC16 384 aaKnown RBP12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 ZMYM5Q9UJ78 669 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 POLIQ9UNA4 740 aa12.84□□□□□ -0.35
RABGGTA-215ENST00000560207 C2orf16Q68DN1 1984 aa12.83□□□□□ -0.35
RABGGTA-215ENST00000560207 CCDC195A0A1B0GUA6 201 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 A0A1W2PQC6 194 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 TRIM66O15016 1216 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 ADAM12O43184 909 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 PDGFRBP09619 1106 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 WEE2P0C1S8 567 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 KCNA5P22460 613 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 NDST1P52848 882 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 BPIFB4P59827 614 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 MRPS5P82675 430 aaKnown RBP12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 UBXN1Q04323 297 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 SCARA5Q6ZMJ2 495 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 RNF19BQ6ZMZ0 732 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 OSTM1Q86WC4 334 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 SLC7A14Q8TBB6 771 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 TATDN2Q93075 761 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 TMEM176AQ96HP8 235 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 ZNF512Q96ME7 567 aaPredicted RBP12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 PKMYT1Q99640 499 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 PIDD1Q9HB75 910 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 AVENQ9NQS1 362 aaPredicted RBP12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 COMMD8Q9NX08 183 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 TAB2Q9NYJ8 693 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 CLEC1BQ9P126 229 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 PRKAG3Q9UGI9 489 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 GTF3C4Q9UKN8 822 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 CNTN6Q9UQ52 1028 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 INSL5Q9Y5Q6 135 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 ZFP37Q9Y6Q3 630 aaPredicted RBP12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 GREB1Q4ZG55 1949 aa12.83□□□□□ -0.36
RABGGTA-215ENST00000560207 DENND4CQ5VZ89 1909 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 ZNF638Q14966 1978 aaKnown RBP12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 SOBPA7XYQ1 873 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 ZNF197O14709 1029 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 CBFA2T2O43439 604 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 TBX10O75333 385 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 MICAL2O94851 1124 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 CCDC172P0C7W6 258 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 HAPLN1P10915 354 aaPredicted RBP12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 VDRP11473 427 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 PTPN2P17706 415 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 LMO2P25791 158 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 ANXA13P27216 316 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 GTF2F1P35269 517 aaKnown RBP eCLIP12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 CDH8P55286 799 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 DUSP4Q13115 394 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 MEA1Q16626 185 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 HSP90AA4PQ58FG1 418 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 TMEM130Q8N3G9 435 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 SMARCD1Q96GM5 515 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 SPATA17Q96L03 361 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 HNRNPABQ99729 332 aaKnown RBP12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 EDEM3Q9BZQ6 932 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 HSD3B7Q9H2F3 369 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 PNPLA8Q9NP80 782 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 UBE2TQ9NPD8 197 aaPredicted RBP12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 UXTQ9UBK9 157 aaPredicted RBP12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 DENND4AQ7Z401 1863 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 CLUHO75153 1309 aa12.82□□□□□ -0.36
RABGGTA-215ENST00000560207 A0A1B0GTH6 734 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 MYBPHLA2RUH7 354 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 LINC01565O15544 149 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 MED7O43513 233 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 CSH1P0DML2 217 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 CSH2P0DML3 217 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 CD58P19256 250 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 SLC9A1P19634 815 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 ACAT1P24752 427 aaKnown RBP12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 PPP3CCP48454 512 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 CYP27A1Q02318 531 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 LRMPQ12912 555 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 TAF12Q16514 161 aa12.81□□□□□ -0.36
RABGGTA-215ENST00000560207 MGAT5BQ3V5L5 792 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms