RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 MTMR12Q9C0I1 747 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 LMAN1LQ9HAT1 526 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 IL21Q9HBE4 155 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 PDE11AQ9HCR9 933 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 INTS13Q9NVM9 706 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 NCDNQ9UBB6 729 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 L1RE1Q9UN81 338 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 SNX9Q9Y5X1 595 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 CFAP54Q96N23 3096 aa13.18□□□□□ -0.3
SPG11-219ENST00000559822 NCANO14594 1321 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 DMDP11532 3685 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 SPTBN4Q9H254 2564 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 MYBPHLA2RUH7 354 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 SLC38A8A6NNN8 435 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 WNT7BP56706 349 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 SNRPFP62306 86 aaKnown RBP13.17□□□□□ -0.3
SPG11-219ENST00000559822 CYP4F8P98187 520 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 DUOXA2Q1HG44 320 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 INTS6LQ5JSJ4 861 aaKnown RBP13.17□□□□□ -0.3
SPG11-219ENST00000559822 FAM26FQ5R3K3 315 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 ATL3Q6DD88 541 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 DPH6Q7L8W6 267 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 HS2ST1Q7LGA3 356 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 ERMP1Q7Z2K6 904 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 WDR49Q8IV35 697 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 ADGRF2Q8IZF7 708 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 CMTM8Q8IZV2 173 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 GPR161Q8N6U8 529 aaKnown RBP13.17□□□□□ -0.3
SPG11-219ENST00000559822 SUMF1Q8NBK3 374 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 NELL1Q92832 810 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 FUBP3Q96I24 572 aaKnown RBP eCLIP13.17□□□□□ -0.3
SPG11-219ENST00000559822 PI4K2AQ9BTU6 479 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 FGFBP2Q9BYJ0 223 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 KIF9Q9HAQ2 790 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 HSPBP1Q9NZL4 362 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 TFIP11Q9UBB9 837 aaKnown RBP13.17□□□□□ -0.3
SPG11-219ENST00000559822 VPS13AQ96RL7 3174 aa13.17□□□□□ -0.3
SPG11-219ENST00000559822 SPECC1L-ADORA2AF8WAN1 911 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 LILRB5O75023 590 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 PRAMEF12O95522 483 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 ZSCAN22P10073 491 aaPredicted RBP13.16□□□□□ -0.3
SPG11-219ENST00000559822 CHRNB1P11230 501 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 CTHP32929 405 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 NLRP12P59046 1061 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 MAPRE1Q15691 268 aaKnown RBP13.16□□□□□ -0.3
SPG11-219ENST00000559822 CFAP221Q4G0U5 840 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 C4orf50Q6ZRC1 276 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 SPATA2LQ8IUW3 424 aaPredicted RBP13.16□□□□□ -0.3
SPG11-219ENST00000559822 SYNPOQ8N3V7 929 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 SPEM1Q8N4L4 309 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 ZNF507Q8TCN5 953 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 EXOC4Q96A65 974 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 HPDLQ96IR7 371 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 C7orf25Q9BPX7 421 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 SLC46A2Q9BY10 475 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 EPC1Q9H2F5 836 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 FAM13BQ9NYF5 915 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 CGNQ9P2M7 1197 aaKnown RBP13.16□□□□□ -0.3
SPG11-219ENST00000559822 SIX4Q9UIU6 781 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 RAB23Q9ULC3 237 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 MAGED2Q9UNF1 606 aaPredicted RBP13.16□□□□□ -0.3
SPG11-219ENST00000559822 SMG5Q9UPR3 1016 aaKnown RBP13.16□□□□□ -0.3
SPG11-219ENST00000559822 OTOGLQ3ZCN5 2332 aa13.16□□□□□ -0.3
SPG11-219ENST00000559822 GABRDO14764 452 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 HMGA1P17096 107 aaKnown RBP13.15□□□□□ -0.3
SPG11-219ENST00000559822 ACAT1P24752 427 aaKnown RBP13.15□□□□□ -0.3
SPG11-219ENST00000559822 CXCL12P48061 93 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 ME1P48163 572 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 CDR1P51861 262 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 AMPD2Q01433 879 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 SNRNP35Q16560 246 aaKnown RBP13.15□□□□□ -0.3
SPG11-219ENST00000559822 ITPRIPL2Q3MIP1 535 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 CC2D1AQ6P1N0 951 aaPredicted RBP13.15□□□□□ -0.3
SPG11-219ENST00000559822 SHC4Q6S5L8 630 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 TSSK4Q6SA08 328 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 UNC13DQ70J99 1090 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 EPM2AIP1Q7L775 607 aaPredicted RBP13.15□□□□□ -0.3
SPG11-219ENST00000559822 CBWD2Q8IUF1 395 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 GPIHBP1Q8IV16 184 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 KIAA2013Q8IYS2 634 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 MAB21L3Q8N8X9 362 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 FSIP1Q8NA03 581 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 CXorf38Q8TB03 319 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 TRMT2BQ96GJ1 504 aaKnown RBP13.15□□□□□ -0.3
SPG11-219ENST00000559822 ZFYVE19Q96K21 471 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 FNBP1Q96RU3 617 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 TMLHEQ9NVH6 421 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 GTSE1Q9NYZ3 720 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 GTF3C4Q9UKN8 822 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 CFAP45Q9UL16 551 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 CDH9Q9ULB4 789 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 ZNF292O60281 2723 aa13.15□□□□□ -0.3
SPG11-219ENST00000559822 PVALEFA0A1B0GWK0 134 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 POLR2DO15514 142 aaKnown RBP13.14□□□□□ -0.31
SPG11-219ENST00000559822 NOL4O94818 638 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 PAPSS2O95340 614 aaPredicted RBP13.14□□□□□ -0.31
SPG11-219ENST00000559822 F13A1P00488 732 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 F11P03951 625 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 TNNI1P19237 187 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 CYP2F1P24903 491 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms