RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 FRMD3A2A2Y4 597 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 MYBPHLA2RUH7 354 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 HCRTO43612 131 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 PRPF6O94906 941 aaKnown RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 ITGB3P05106 788 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 HMGA1P17096 107 aaKnown RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 ACAT1P24752 427 aaKnown RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 CDC25CP30307 473 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 STAT6P42226 847 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 CXCL12P48061 93 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 CCR3P51677 355 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 MLLT6P55198 1093 aaPredicted RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 SLC39A14Q15043 492 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 PON2Q15165 354 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 RSPO4Q2I0M5 234 aaPredicted RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 ARHGAP29Q52LW3 1261 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 CCDC73Q6ZRK6 1079 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 DGLUCYQ7Z3D6 616 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 PDILTQ8N807 584 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 GLIS3Q8NEA6 775 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 CXorf38Q8TB03 319 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 SPPL2BQ8TCT7 592 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 BPIFB1Q8TDL5 484 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 NOC3LQ8WTT2 800 aaKnown RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 C2orf15Q8WU43 125 aaKnown RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 HPS3Q969F9 1004 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 ZNF560Q96MR9 790 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 PI4K2AQ9BTU6 479 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 FAM126AQ9BYI3 521 aaPredicted RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 C8orf33Q9H7E9 229 aaPredicted RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 PDE11AQ9HCR9 933 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 OLFML3Q9NRN5 406 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 PANK4Q9NVE7 773 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 OBP2AQ9NY56 170 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 RBAKQ9NYW8 714 aaPredicted RBP12.53□□□□□ -0.4
USP3-214ENST00000559718 L1RE1Q9UN81 338 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 CCL26Q9Y258 94 aa12.53□□□□□ -0.4
USP3-214ENST00000559718 CHURC1-FNTBB4DL54 471 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 F11P03951 625 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 GARTP22102 1010 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 TGM1P22735 817 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 WEE1P30291 646 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 PNPLA4P41247 253 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 FNTBP49356 437 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 NLRP12P59046 1061 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 SMARCB1Q12824 385 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 BFSP1Q12934 665 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 SRSF5Q13243 272 aaKnown RBP12.52□□□□□ -0.41
USP3-214ENST00000559718 PUM1Q14671 1186 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP3-214ENST00000559718 TAF12Q16514 161 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 LMBRD2Q68DH5 695 aaPredicted RBP12.52□□□□□ -0.41
USP3-214ENST00000559718 OSTM1Q86WC4 334 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 RALGPS2Q86X27 583 aaPredicted RBP12.52□□□□□ -0.41
USP3-214ENST00000559718 NT5DC4Q86YG4 428 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 DCP1BQ8IZD4 617 aaKnown RBP12.52□□□□□ -0.41
USP3-214ENST00000559718 SYCP3Q8IZU3 236 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 CMTM8Q8IZV2 173 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 SPEM1Q8N4L4 309 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 CSGALNACT2Q8N6G5 542 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 MAB21L3Q8N8X9 362 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 RIN3Q8TB24 985 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 MSANTD3Q96H12 275 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 GCNAQ96QF7 691 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 IER2Q9BTL4 223 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 MTMR12Q9C0I1 747 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 PARD6AQ9NPB6 346 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 DLL3Q9NYJ7 618 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 SIX4Q9UIU6 781 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 MAGED2Q9UNF1 606 aaPredicted RBP12.52□□□□□ -0.41
USP3-214ENST00000559718 PCDHB5Q9Y5E4 795 aa12.52□□□□□ -0.41
USP3-214ENST00000559718 KIF26AQ9ULI4 1882 aaPredicted RBP12.52□□□□□ -0.41
USP3-214ENST00000559718 DENND4CQ5VZ89 1909 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 OTOL1A6NHN0 477 aaPredicted RBP12.51□□□□□ -0.41
USP3-214ENST00000559718 K7ESF4 209 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 HRO43593 1189 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 EXTL3O43909 919 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 PRPF40AO75400 957 aaKnown RBP12.51□□□□□ -0.41
USP3-214ENST00000559718 TADA3O75528 432 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 KRT19P08727 400 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 CYP2F1P24903 491 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 NRLP54845 237 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 TSPY1Q01534 308 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 LRRC32Q14392 662 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 PPP2R5DQ14738 602 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 DDR2Q16832 855 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 TXNDC8Q6A555 127 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 HEATR6Q6AI08 1181 aaKnown RBP12.51□□□□□ -0.41
USP3-214ENST00000559718 TRIM68Q6AZZ1 485 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 CELF5Q8N6W0 485 aaKnown RBP12.51□□□□□ -0.41
USP3-214ENST00000559718 USP13Q92995 863 aaPredicted RBP12.51□□□□□ -0.41
USP3-214ENST00000559718 PKMYT1Q99640 499 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 HPS4Q9NQG7 708 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 GKN1Q9NS71 199 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 DDX43Q9NXZ2 648 aaKnown RBP12.51□□□□□ -0.41
USP3-214ENST00000559718 GTF3C4Q9UKN8 822 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 SNX9Q9Y5X1 595 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 PTPRJQ12913 1337 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 DNAH14Q0VDD8 3507 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 CACNA1AO00555 2505 aa12.51□□□□□ -0.41
USP3-214ENST00000559718 HUS1O60921 280 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms