RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 AP1G1O43747 822 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 CNMDO75829 334 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 RHOBTB3O94955 611 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 GSNP06396 782 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 PLA2G4BP0C869 781 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ARP10275 920 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 CYP2C8P10632 490 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 HOXD10P28358 340 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 AFMP43652 599 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 NOP2P46087 812 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 QARSP47897 775 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 PSMC5P62195 406 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 MRPS9P82933 396 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 GRIN1Q05586 938 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TTLL4Q14679 1199 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ODF1Q14990 250 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TERF2Q15554 542 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ANO6Q4KMQ2 910 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TMEM119Q4V9L6 283 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ZNF658Q5TYW1 1059 aaPredicted RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 FAM160B1Q5W0V3 765 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ZNF280DQ6N043 979 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 FOXR2Q6PJQ5 311 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 SLC30A10Q6XR72 485 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 C20orf204Q6ZNR8 217 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 USP49Q70CQ1 688 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 UNC13DQ70J99 1090 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 SV2AQ7L0J3 742 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 C16orf59Q7L2K0 433 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ARMCX6Q7L4S7 300 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 OVCH1Q7RTY7 1134 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 CATSPER3Q86XQ3 398 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 C4orf19Q8IY42 314 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 NKAPQ8N5F7 415 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 ANKRD13CQ8N6S4 541 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 SYT2Q8N9I0 419 aaPredicted RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 PPHLN1Q8NEY8 458 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 NPLOC4Q8TAT6 608 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 NOC3LQ8WTT2 800 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 SCFD2Q8WU76 684 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 SNRNP27Q8WVK2 155 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 SOCS4Q8WXH5 440 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TRIM63Q969Q1 353 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ISL2Q96A47 359 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TEKT5Q96M29 485 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TBATAQ96M53 351 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 HSD17B14Q9BPX1 270 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 JPH2Q9BR39 696 aaPredicted RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 BOCQ9BWV1 1114 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 SUGCTQ9HAC7 445 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 MLXIPQ9HAP2 919 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 NRBP2Q9NSY0 501 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ANKEF1Q9NU02 776 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 TRMT13Q9NUP7 481 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 EXOC1Q9NV70 894 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 GPATCH2Q9NW75 528 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 OXSMQ9NWU1 459 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 COL20A1Q9P218 1284 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 SLC9A2Q9UBY0 812 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 PCOLCE2Q9UKZ9 415 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 AP4E1Q9UPM8 1137 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 COQ6Q9Y2Z9 468 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 NOC2LQ9Y3T9 749 aaKnown RBP5.59□□□□□ -1.51
LDLR-209ENST00000558528 IPPQ9Y573 584 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 BACE2Q9Y5Z0 518 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 DGKBQ9Y6T7 804 aa5.59□□□□□ -1.51
LDLR-209ENST00000558528 ALPK3Q96L96 1907 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CFAP54Q96N23 3096 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CCDC66A2RUB6 948 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ARHGEF35A5YM69 484 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 H0YCG3 227 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 IGF2BP3O00425 579 aaKnown RBP eCLIP5.58□□□□□ -1.52
LDLR-209ENST00000558528 PSMA7O14818 248 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SIGLEC6O43699 453 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 NBNO60934 754 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 DGAT1O75907 488 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SLITRK3O94933 977 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SOD2P04179 222 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 RPN1P04843 607 aaKnown RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 THBDP07204 575 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 TPM2P07951 284 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ADH5P11766 374 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 GAP43P17677 238 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CDC25AP30304 524 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 RGS2P41220 211 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SLC26A2P50443 739 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 UBXN2AP68543 259 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ASIC1P78348 528 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SP3Q02447 781 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SPAG1Q07617 926 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SPIRE1Q08AE8 756 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CRHR2Q13324 411 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 PNOCQ13519 176 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ALCAMQ13740 583 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 GRB14Q14449 540 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ELF2Q15723 593 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CLUL1Q15846 466 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 TPD52L1Q16890 204 aaPredicted RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 LONRF1Q17RB8 773 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ZNF792Q3KQV3 632 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms