RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 MYL7Q01449 175 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 TSPY1Q01534 308 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 VEPH1Q14D04 833 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 KNOP1Q1ED39 458 aaKnown RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 FOXD4L6Q3SYB3 417 aaPredicted RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 FAM78AQ5JUQ0 283 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 TANGO2Q6ICL3 276 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 FOXD4L3Q6VB84 417 aaPredicted RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 TMEM130Q8N3G9 435 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 DTWD2Q8NBA8 298 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 OR10T2Q8NGX3 314 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 LEO1Q8WVC0 666 aaPredicted RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 ING5Q8WYH8 240 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 ATOH1Q92858 354 aaPredicted RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 IRF7Q92985 503 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 PAGE5Q96GU1 130 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 SPATA32Q96LK8 384 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 CEP295NLQ96MC4 621 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 PGLYRP2Q96PD5 576 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 TRMT61BQ9BVS5 477 aaKnown RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 REPIN1Q9BWE0 567 aaKnown RBP10.87□□□□□ -0.67
USP3-207ENST00000558218 DNAJC25Q9H1X3 360 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 CRISPLD1Q9H336 500 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 TBC1D17Q9HA65 648 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 AGPAT3Q9NRZ7 376 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 OBP2AQ9NY56 170 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 CA14Q9ULX7 337 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 HPSEQ9Y251 543 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 SLC27A5Q9Y2P5 690 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 ZDHHC9Q9Y397 364 aa10.87□□□□□ -0.67
USP3-207ENST00000558218 TCHHQ07283 1943 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 A0A1W2PQ27 194 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 A0A1W2PQ64 194 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 A0A1W2PQD8 194 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 KANSL1LA0AUZ9 987 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 MAN2B1O00754 1011 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 NCAM2O15394 837 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 KIF20AO95235 890 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 FCARP24071 287 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 PCSK1P29120 753 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 NBL1P41271 181 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 AFMP43652 599 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 AP3M2P53677 418 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 WNT7BP56706 349 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 CUL4BQ13620 913 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 PSMD6Q15008 389 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 MLF2Q15773 248 aaPredicted RBP10.86□□□□□ -0.67
USP3-207ENST00000558218 SNRNP35Q16560 246 aaKnown RBP10.86□□□□□ -0.67
USP3-207ENST00000558218 SLC39A12Q504Y0 691 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 C1orf228Q6PIY5 440 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 LIMS2Q7Z4I7 341 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 ALYREFQ86V81 257 aaKnown RBP10.86□□□□□ -0.67
USP3-207ENST00000558218 LRRTM3Q86VH5 581 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 TMC8Q8IU68 726 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 CBWD2Q8IUF1 395 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 SLC9A9Q8IVB4 645 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 MFSD6LQ8IWD5 586 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 PDCL2Q8N4E4 241 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 GLIS3Q8NEA6 775 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 ZSWIM2Q8NEG5 633 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 HPS3Q969F9 1004 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 TCEAL4Q96EI5 215 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 FUBP3Q96I24 572 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP3-207ENST00000558218 FNBP1Q96RU3 617 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 KXD1Q9BQD3 176 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 SEMA4AQ9H3S1 761 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 SERTAD1Q9UHV2 236 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 SIX4Q9UIU6 781 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 MRPS17Q9Y2R5 130 aaKnown RBP10.86□□□□□ -0.67
USP3-207ENST00000558218 PCDHB5Q9Y5E4 795 aa10.86□□□□□ -0.67
USP3-207ENST00000558218 H0Y858 1186 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 STAU1O95793 577 aaKnown RBP10.85□□□□□ -0.67
USP3-207ENST00000558218 KRT19P08727 400 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 DDX6P26196 483 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP3-207ENST00000558218 CDC25CP30307 473 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 GCGRP47871 477 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 RPL10AP62906 217 aaKnown RBP10.85□□□□□ -0.67
USP3-207ENST00000558218 SNW1Q13573 536 aaKnown RBP10.85□□□□□ -0.67
USP3-207ENST00000558218 BECN1Q14457 450 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 MAPRE1Q15691 268 aaKnown RBP10.85□□□□□ -0.67
USP3-207ENST00000558218 TAF12Q16514 161 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 MGAT5BQ3V5L5 792 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 CFAP221Q4G0U5 840 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 ARHGAP15Q53QZ3 475 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 TRAPPC11Q7Z392 1133 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 PJA1Q8NG27 643 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 SHKBP1Q8TBC3 707 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 ZSCAN18Q8TBC5 510 aaPredicted RBP10.85□□□□□ -0.67
USP3-207ENST00000558218 CCDC47Q96A33 483 aaKnown RBP10.85□□□□□ -0.67
USP3-207ENST00000558218 MSANTD3Q96H12 275 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 CCDC34Q96HJ3 373 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 HPDLQ96IR7 371 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 ZSWIM3Q96MP5 696 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 TMEM209Q96SK2 561 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 PLA2G2FQ9BZM2 168 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 MTMR12Q9C0I1 747 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 BLZF1Q9H2G9 400 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 BRD9Q9H8M2 597 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 SLC39A2Q9NP94 309 aa10.85□□□□□ -0.67
USP3-207ENST00000558218 DDX43Q9NXZ2 648 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms