RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MON1BQ7L1V2 547 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 FAM71DQ8N9W8 422 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 SEPT9Q9UHD8 586 aaPredicted RBP12.98□□□□□ -0.33
LDLR-205ENST00000557933 SERPINA10Q9UK55 444 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 LAMA3Q16787 3333 aa12.98□□□□□ -0.33
LDLR-205ENST00000557933 ZNF541Q9H0D2 1346 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 TTLL13PA6NNM8 815 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 ZNF862O60290 1169 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 SORBS2O94875 1100 aaKnown RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 HAUS5O94927 633 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 ZBTB7AO95365 584 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 GPC3P51654 580 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 RPS6P62753 249 aaKnown RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 HIF1AQ16665 826 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 PPP1R15BQ5SWA1 713 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 SWSAP1Q6NVH7 229 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 NPNTQ6UXI9 565 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 C4orf50Q6ZRC1 276 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 ZBTB33Q86T24 672 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 LMNTD2Q8IXW0 634 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 NETO2Q8NC67 525 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 ACAP3Q96P50 834 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 TMEM120AQ9BXJ8 343 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 ZNF341Q9BYN7 854 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 NMUR2Q9GZQ4 415 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 PIH1D1Q9NWS0 290 aaKnown RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 KCNG1Q9UIX4 513 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 PACSIN3Q9UKS6 424 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 MRPL11Q9Y3B7 192 aaKnown RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 NUB1Q9Y5A7 615 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 A6NHS1 94 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 TMEM63AO94886 807 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 MYL2P10916 166 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 GTF2H1P32780 548 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 PEX6Q13608 980 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 DALRD3Q5D0E6 543 aaKnown RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 WDR44Q5JSH3 913 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 FOXB2Q5VYV0 432 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 CDHR3Q6ZTQ4 885 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 AGGF1Q8N302 714 aaeCLIP12.97□□□□□ -0.33
LDLR-205ENST00000557933 RBBP8NLQ8NC74 664 aaPredicted RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 ACTL9Q8TC94 416 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 SERAC1Q96JX3 654 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 AGO4Q9HCK5 861 aaKnown RBP12.97□□□□□ -0.33
LDLR-205ENST00000557933 NR2E3Q9Y5X4 410 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 COL4A5P29400 1685 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 ATP8B3O60423 1300 aa12.97□□□□□ -0.33
LDLR-205ENST00000557933 TYROBPO43914 113 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 DCTN3O75935 186 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 STK10O94804 968 aaKnown RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 ATP6V1C1P21283 382 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 SP100P23497 879 aaPredicted RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 YWHAGP61981 247 aaKnown RBP eCLIP12.96□□□□□ -0.33
LDLR-205ENST00000557933 OTUD4Q01804 1114 aaKnown RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 KLC1Q07866 573 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 MKRN3Q13064 507 aaKnown RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 FYB2Q5VWT5 728 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 PALM2Q8IXS6 379 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 CFAP36Q96G28 342 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 SLITRK1Q96PX8 696 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 PAPOLBQ9NRJ5 636 aaKnown RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 PCDHB2Q9Y5E7 798 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 GREB1LQ9C091 1923 aaPredicted RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 LRRIQ4A6NIV6 560 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 UGT1A9O60656 530 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 PYGBP11216 843 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 LIG4P49917 911 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 RASSF2P50749 326 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 NOMO3P69849 1222 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 CTC1Q2NKJ3 1217 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 B3GNT9Q6UX72 402 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 HSPH1Q92598 858 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 CCDC124Q96CT7 223 aaKnown RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 HAPLN2Q9GZV7 340 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 UGT1A7Q9HAW7 530 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 UGT1A10Q9HAW8 530 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 UGT1A8Q9HAW9 530 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 TAS2R1Q9NYW7 299 aa12.96□□□□□ -0.33
LDLR-205ENST00000557933 PSMC3IPQ9P2W1 217 aaPredicted RBP12.96□□□□□ -0.33
LDLR-205ENST00000557933 UBE4BO95155 1302 aa12.96□□□□□ -0.34
LDLR-205ENST00000557933 CST8O60676 142 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 VNN1O95497 513 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 CST3P01034 146 aaPredicted RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 PTPN4P29074 926 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 ARFIP2P53365 341 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 FAAP100Q0VG06 881 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 TAS1R3Q7RTX0 852 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 UNC45BQ8IWX7 931 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 RNF217Q8TC41 542 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 MORC4Q8TE76 937 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 SLCO2A1Q92959 643 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 TARS2Q9BW92 718 aaKnown RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 TSSK1BQ9BXA7 367 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 CALN1Q9BXU9 219 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 MANSC1Q9H8J5 431 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 LPXNO60711 386 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 EDN1P05305 212 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 ESRRAP11474 423 aaPredicted RBP12.95□□□□□ -0.34
LDLR-205ENST00000557933 SERPINB4P48594 390 aa12.95□□□□□ -0.34
LDLR-205ENST00000557933 ALDH18A1P54886 795 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms