RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 MYH4Q9Y623 1939 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 C2orf71A6NGG8 1288 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ESRRAP11474 423 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 LCP1P13796 627 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 TAF5Q15542 800 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 CCNG2Q16589 344 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 C15orf59Q2T9L4 293 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 ATF7IP2Q5U623 682 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 APBB1IPQ7Z5R6 666 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 LONP2Q86WA8 852 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 JOSD2Q8TAC2 188 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 RNF34Q969K3 372 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 NCAPGQ9BPX3 1015 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 CYP39A1Q9NYL5 469 aa12.76□□□□□ -0.37
CCDC88C-211ENST00000556726 COPEO14579 308 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 CD48P09326 243 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 MUTP22033 750 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 RASSF2P50749 326 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 DPY19L2P1Q6NXN4 242 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 TRIM72Q6ZMU5 477 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 PAF1Q8N7H5 531 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 ATP11CQ8NB49 1132 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 TLCD1Q96CP7 247 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 RAB3IPQ96QF0 476 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 LRRC19Q9H756 370 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 A6NJR5 290 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 TXNDC9O14530 226 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 SP2Q02086 613 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 CFAP157Q5JU67 520 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 MROH9Q5TGP6 573 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 EEF1DP3Q658K8 133 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 MTDHQ86UE4 582 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 AGAP11Q8TF27 550 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 KIF12Q96FN5 646 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 SMYD3Q9H7B4 428 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 TXLNGQ9NUQ3 528 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 GYG2O15488 501 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 KRT16P08779 473 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 CETPP11597 493 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 PTPRAP18433 802 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 ELF1P32519 619 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 POU5F1Q01860 360 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 ROR1Q01973 937 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 SLC20A2Q08357 652 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 CAPSQ13938 189 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 LRRC36Q1X8D7 754 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 SGSM1Q2NKQ1 1148 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 TFDP3Q5H9I0 405 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 C6orf163Q5TEZ5 329 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 CEP128Q6ZU80 1094 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 KCTD17Q8N5Z5 321 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 TIPINQ9BVW5 301 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 KCNG1Q9UIX4 513 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 INPP5FQ9Y2H2 1132 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
CCDC88C-211ENST00000556726 CREB3O43889 395 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 ARFIP2P53365 341 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 YWHAEP62258 255 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 PTK7Q13308 1070 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 MPP2Q14168 576 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 EXD1Q8NHP7 514 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 CCT6BQ92526 530 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 DCPSQ96C86 337 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 CCDC124Q96CT7 223 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 CGRRF1Q99675 332 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 TRIM55Q9BYV6 548 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 ARMCX1Q9P291 453 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 FIS1Q9Y3D6 152 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 NR2E3Q9Y5X4 410 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 DDX60LQ5H9U9 1706 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 MED7O43513 233 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 P4HA1P13674 534 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 UBA1P22314 1058 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 CENPCQ03188 943 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 LAMTOR4Q0VGL1 99 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 PSMD6Q15008 389 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 FITM2Q8N6M3 262 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 DDX27Q96GQ7 796 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 PAFAH2Q99487 392 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 PCMTD2Q9NV79 361 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 KLK14Q9P0G3 267 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 PSMC3IPQ9P2W1 217 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 KRT7P08729 469 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 PTK6Q13882 451 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 HSDL1Q3SXM5 330 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 ACOT1Q86TX2 421 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 MAP7D3Q8IWC1 876 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 EIF1ADQ8N9N8 165 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 MFSD14AQ96MC6 490 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 MED10Q9BTT4 135 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 YIPF3Q9GZM5 350 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 MYLK2Q9H1R3 596 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 KDM4CQ9H3R0 1056 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 CYP4F11Q9HBI6 524 aa12.74□□□□□ -0.37
CCDC88C-211ENST00000556726 CAPN9O14815 690 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 PSTPIP1O43586 416 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 ENO1P06733 434 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 EPHB2P29323 1055 aa12.73□□□□□ -0.37
CCDC88C-211ENST00000556726 NAMPTP43490 491 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms