RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 OSBPP22059 807 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 MMP14P50281 582 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 GCNT1Q02742 428 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 PKN2Q16513 984 aaKnown RBP15.59■□□□□ 0.09
CUX1-215ENST00000556210 ZACNQ401N2 412 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 ERMARDQ5T6L9 678 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 EXOC3L1Q86VI1 746 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 RASGEF1CQ8N431 466 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 DCLK2Q8N568 766 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 PDGFCQ9NRA1 345 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 TXLNGQ9NUQ3 528 aa15.59■□□□□ 0.09
CUX1-215ENST00000556210 NCANO14594 1321 aa15.58■□□□□ 0.09
CUX1-215ENST00000556210 SPDYE16A6NNV3 312 aaPredicted RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 NQO1P15559 274 aaKnown RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 MYBPC2Q14324 1141 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 FASTKD3Q14CZ7 662 aaKnown RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 C6orf163Q5TEZ5 329 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 AP1ARQ63HQ0 302 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 DENND1BQ6P3S1 775 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 CFAP61Q8NHU2 1237 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 FAM167AQ96KS9 214 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 CGRRF1Q99675 332 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 SLCO1B3Q9NPD5 702 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 TRIM33Q9UPN9 1127 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 NOD1Q9Y239 953 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 PPFIA2O75334 1257 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 RASSF9O75901 435 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 ALDH5A1P51649 535 aaPredicted RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 NCKAP1LP55160 1127 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 C15orf59Q2T9L4 293 aaPredicted RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 LGSNQ5TDP6 509 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 NPNTQ6UXI9 565 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 ARMC2Q8NEN0 867 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 CRYGNQ8WXF5 182 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 APOBEC3GQ9HC16 384 aaKnown RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.58■□□□□ 0.089e-8■■■■■ 27.8
CUX1-215ENST00000556210 ASNSD1Q9NWL6 643 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 ATXN2Q99700 1313 aaKnown RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 BTNL10A8MVZ5 291 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 ROR1Q01973 937 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 MMRN1Q13201 1228 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 NAIF1Q69YI7 327 aaPredicted RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 SPOCD1Q6ZMY3 1216 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 SLFN11Q7Z7L1 901 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 SPOCK2Q92563 424 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 PRCCQ92733 491 aaPredicted RBP15.58■□□□□ 0.08
CUX1-215ENST00000556210 CYTH2Q99418 400 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 SHCBP1LQ9BZQ2 653 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 LRRC4Q9HBW1 653 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 TJP2Q9UDY2 1190 aa15.58■□□□□ 0.08
CUX1-215ENST00000556210 LPXNO60711 386 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 INSRRP14616 1297 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 MXD4Q14582 209 aaPredicted RBP15.57■□□□□ 0.08
CUX1-215ENST00000556210 STAT4Q14765 748 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 ACCSLQ4AC99 568 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 TWF2Q6IBS0 349 aaKnown RBP15.57■□□□□ 0.08
CUX1-215ENST00000556210 SCUBE3Q8IX30 993 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 C12orf29Q8N999 325 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 AFG1LQ8WV93 481 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 BORCS6Q96GS4 357 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 ACAP3Q96P50 834 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 PPARGC1AQ9UBK2 798 aaKnown RBP15.57■□□□□ 0.08
CUX1-215ENST00000556210 STRIP2Q9ULQ0 834 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 TTLL13PA6NNM8 815 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 CES2O00748 559 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 COPEO14579 308 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 ADCY3O60266 1144 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 NPM3O75607 178 aaKnown RBP15.57■□□□□ 0.08
CUX1-215ENST00000556210 SLC39A4Q6P5W5 647 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 FBXO36Q8NEA4 188 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 SMYD3Q9H7B4 428 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 SLC12A6Q9UHW9 1150 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 MCM8Q9UJA3 840 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 FNDC3AQ9Y2H6 1198 aaKnown RBP15.57■□□□□ 0.08
CUX1-215ENST00000556210 STXBP5LQ9Y2K9 1186 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 STAG3L1P0CL83 205 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 GHRP10912 638 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 KCNA2P16389 499 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 RAD23BP54727 409 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 AP1B1Q10567 949 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 TMEM132DQ14C87 1099 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 PSMD6Q15008 389 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 TXNRD3NBQ6F5E7 133 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 FOXR2Q6PJQ5 311 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 DTX3LQ8TDB6 740 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 TSNARE1Q96NA8 513 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 TMEM237Q96Q45 408 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 GPR88Q9GZN0 384 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 PORCNQ9H237 461 aa15.57■□□□□ 0.08
CUX1-215ENST00000556210 CNTNAP1P78357 1384 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 CYP1A2P05177 515 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 KCNJ2P63252 427 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 CAV1Q03135 178 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 ITIH4Q14624 930 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 TFDP3Q5H9I0 405 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 IER5Q5VY09 327 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 EIF1ADQ8N9N8 165 aaKnown RBP15.56■□□□□ 0.08
CUX1-215ENST00000556210 ATP11CQ8NB49 1132 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 HAO1Q9UJM8 370 aa15.56■□□□□ 0.08
CUX1-215ENST00000556210 TIAM2Q8IVF5 1701 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms