RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 MUTYHQ9UIF7 546 aa13.22□□□□□ -0.29
SYNE2-214ENST00000554928 RWDD2AQ9UIY3 292 aa13.22□□□□□ -0.29
SYNE2-214ENST00000554928 NOTCH4Q99466 2003 aa13.22□□□□□ -0.29
SYNE2-214ENST00000554928 POU2F2P09086 479 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 HAPLN1P10915 354 aaPredicted RBP13.21□□□□□ -0.29
SYNE2-214ENST00000554928 GJA1P17302 382 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 CEBPBP17676 345 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 FSHRP23945 695 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 CYP2F1P24903 491 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 GTF2H1P32780 548 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 GNL1P36915 607 aaPredicted RBP13.21□□□□□ -0.29
SYNE2-214ENST00000554928 CACNA2D1P54289 1103 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 NOP14P78316 857 aaKnown RBP13.21□□□□□ -0.29
SYNE2-214ENST00000554928 TSPY1Q01534 308 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 MGAT5BQ3V5L5 792 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 MDH1BQ5I0G3 518 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 KRT39Q6A163 491 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 FAM171BQ6P995 826 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 FOXR2Q6PJQ5 311 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 FRMD5Q7Z6J6 570 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 TRIM59Q8IWR1 403 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 DCP1BQ8IZD4 617 aaKnown RBP13.21□□□□□ -0.29
SYNE2-214ENST00000554928 MLKLQ8NB16 471 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 GIPC2Q8TF65 315 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 TWNKQ96RR1 684 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 ARID3AQ99856 593 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 CORO1BQ9BR76 489 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 LRRC3Q9BY71 257 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 SNX25Q9H3E2 840 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 EPHX3Q9H6B9 360 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 TMEM30AQ9NV96 361 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 LIMD1Q9UGP4 676 aa13.21□□□□□ -0.29
SYNE2-214ENST00000554928 CLDN5O00501 218 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 XYLBO75191 536 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 PCSK1P29120 753 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 GBP2P32456 591 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-214ENST00000554928 MTMR3Q13615 1198 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 DDR2Q16832 855 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 PABPC1LQ4VXU2 614 aaKnown RBP13.2□□□□□ -0.3
SYNE2-214ENST00000554928 HSP90AA4PQ58FG1 418 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 PRSS36Q5K4E3 855 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 CYP26C1Q6V0L0 522 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 C11orf57Q6ZUT1 292 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-214ENST00000554928 TMC8Q8IU68 726 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 TDRD5Q8NAT2 981 aaKnown RBP13.2□□□□□ -0.3
SYNE2-214ENST00000554928 SPATA18Q8TC71 538 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 RSAD2Q8WXG1 361 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 BCO2Q9BYV7 579 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 RAB20Q9NX57 234 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 CDH9Q9ULB4 789 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 COQ4Q9Y3A0 265 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 PCDHB5Q9Y5E4 795 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 CUL9Q8IWT3 2517 aa13.2□□□□□ -0.3
SYNE2-214ENST00000554928 A8MXQ7 604 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 MBD3O95983 291 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 MYL4P12829 197 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 PTPN2P17706 415 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 PTPN1P18031 435 aaKnown RBP13.19□□□□□ -0.3
SYNE2-214ENST00000554928 BDNFP23560 247 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 FMO5P49326 533 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 NDST1P52848 882 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 MARSP56192 900 aaKnown RBP13.19□□□□□ -0.3
SYNE2-214ENST00000554928 LRMPQ12912 555 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 CCDC183Q5T5S1 534 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 RTL10Q7L3V2 364 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 NPAS3Q8IXF0 933 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 FBXL13Q8NEE6 735 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 SPPL2BQ8TCT7 592 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 WHAMMQ8TF30 809 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 TAF4BQ92750 862 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 FGF13Q92913 245 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 MS4A3Q96HJ5 214 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 PCED1BQ96HM7 432 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 CNOT6LQ96LI5 555 aaKnown RBP13.19□□□□□ -0.3
SYNE2-214ENST00000554928 RPP25Q9BUL9 199 aaKnown RBP13.19□□□□□ -0.3
SYNE2-214ENST00000554928 B3GNT5Q9BYG0 378 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 ZNF518BQ9C0D4 1074 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 ELOVL4Q9GZR5 314 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 NIF3L1Q9GZT8 377 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 METTL14Q9HCE5 456 aaKnown RBP13.19□□□□□ -0.3
SYNE2-214ENST00000554928 MAFFQ9ULX9 164 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 USTQ9Y2C2 406 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 NR2E1Q9Y466 385 aa13.19□□□□□ -0.3
SYNE2-214ENST00000554928 CD58P19256 250 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 ALDH1A3P47895 512 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 EPHA5P54756 1037 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 CYP27A1Q02318 531 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 STXBP5Q5T5C0 1151 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 PAQR9Q6ZVX9 377 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 OTOP3Q7RTS5 596 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 DNAJB7Q7Z6W7 309 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-214ENST00000554928 ACOT1Q86TX2 421 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 SPATA2LQ8IUW3 424 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-214ENST00000554928 ZDHHC14Q8IZN3 488 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 B3GALNT2Q8NCR0 500 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 LMO3Q8TAP4 145 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 SHKBP1Q8TBC3 707 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 MYCBPAPQ8TBZ2 947 aa13.18□□□□□ -0.3
SYNE2-214ENST00000554928 C2orf15Q8WU43 125 aaKnown RBP13.18□□□□□ -0.3
SYNE2-214ENST00000554928 KAT5Q92993 513 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms