RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RPL13P26373 211 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 PSMC2P35998 433 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 GNL1P36915 607 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 LHX1P48742 406 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 EPHA5P54756 1037 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 TNNC1P63316 161 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 MYL7Q01449 175 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 ORC1Q13415 861 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 ZNF699Q32M78 642 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 EDRF1Q3B7T1 1238 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 FAM78AQ5JUQ0 283 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 CYP4A22Q5TCH4 519 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 PDZD4Q76G19 769 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 ELOA2Q8IYF1 753 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 ELMOD1Q8N336 334 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 OR6B3Q8NGW1 331 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 FAM200AQ8TCP9 573 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 TAS1R2Q8TE23 839 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 PBXIP1Q96AQ6 731 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 AVENQ9NQS1 362 aaPredicted RBP12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 ASAH2Q9NR71 780 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 IGSF9Q9P2J2 1179 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 PCDHB5Q9Y5E4 795 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 ZNF318Q5VUA4 2279 aa12.4□□□□□ -0.42
CCDC88C-208ENST00000554165 NCANO14594 1321 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 CLSTN1O94985 981 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 STAU1O95793 577 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 CFHP08603 1231 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 FCARP24071 287 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 PCSK1P29120 753 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 VIPR2P41587 438 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 TUFMP49411 452 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 GPC5P78333 572 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 MORC3Q14149 939 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 COBLL1Q53SF7 1204 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 MDH1BQ5I0G3 518 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 TANGO2Q6ICL3 276 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 FAM171BQ6P995 826 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 DPH6Q7L8W6 267 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 UBALD2Q8IYN6 164 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 SPPL2BQ8TCT7 592 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 SEMA4DQ92854 862 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 PSMG2Q969U7 264 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 MYLPFQ96A32 169 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 SYAP1Q96A49 352 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 DUSP9Q99956 384 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 SNX25Q9H3E2 840 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 IL21Q9HBE4 155 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 APOBEC3GQ9HC16 384 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 TMEM30AQ9NV96 361 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 HMGXB4Q9UGU5 601 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 HOOK1Q9UJC3 728 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 CDH9Q9ULB4 789 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 DUSP12Q9UNI6 340 aa12.39□□□□□ -0.43
CCDC88C-208ENST00000554165 CLDN5O00501 218 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 ZNF197O14709 1029 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 IKBKBO14920 756 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 CETN3O15182 167 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 MAPK13O15264 365 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 TACC1O75410 805 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 KRT13P13646 458 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 HMGA1P17096 107 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 BDNFP23560 247 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 CCNE1P24864 410 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 ATICP31939 592 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 PIK3CAP42336 1068 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 AP3M2P53677 418 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 CACNA2D1P54289 1103 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 VCPP55072 806 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 STX17P56962 302 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 CYP4F8P98187 520 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 PLD1Q13393 1074 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 NFE2Q16621 373 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 ZNF667Q5HYK9 610 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 TTI2Q6NXR4 508 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 INTS8Q75QN2 995 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 TMEM150AQ86TG1 271 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 SPATA2LQ8IUW3 424 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 SCN4BQ8IWT1 228 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 ZC3H3Q8IXZ2 948 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 C2orf15Q8WU43 125 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 NELFBQ8WX92 580 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 RSPRY1Q96DX4 576 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 MKNK1Q9BUB5 465 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 GDE1Q9NZC3 331 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 HSFX1Q9UBD0 423 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 CTNND2Q9UQB3 1225 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 COL4A3Q01955 1670 aa12.38□□□□□ -0.43
CCDC88C-208ENST00000554165 KRBA1A5PL33 1030 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 A8MXQ7 604 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ASS1P00966 412 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 EPB41P11171 864 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 PTPN1P18031 435 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 GABRR2P28476 465 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ASPAP45381 313 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 MCCD1P59942 119 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 FKBP3Q00688 224 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 CYP27A1Q02318 531 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 SMARCB1Q12824 385 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 GRM2Q14416 872 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms