RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 HRO43593 1189 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 RRP9O43818 475 aaKnown RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 LRP3O75074 770 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 PRAMEF12O95522 483 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 CAVIN2O95810 425 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 PIGRP01833 764 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 TGM1P22735 817 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 PAX3P23760 479 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 GJB2P29033 226 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 ABCD1P33897 745 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 AVPR1AP37288 418 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 ACOT2P49753 483 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 TAF6P49848 677 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 TNK2Q07912 1038 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 BFSP1Q12934 665 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 MCM6Q14566 821 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 ITPRIPL2Q3MIP1 535 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 AASDHQ4L235 1098 aaPredicted RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 ARSHQ5FYA8 562 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 PPM1JQ5JR12 505 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 FOXD4L5Q5VV16 416 aaPredicted RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 LARP1BQ659C4 914 aaKnown RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 TTC16Q8NEE8 873 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 FOXD4L4Q8WXT5 416 aaPredicted RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 SCAND2PQ9GZW5 306 aaPredicted RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 OBP2AQ9NY56 170 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 HSFX1Q9UBD0 423 aa9.53□□□□□ -0.88
TDP1-208ENST00000553989 CPSF3Q9UKF6 684 aaKnown RBP9.53□□□□□ -0.88
TDP1-208ENST00000553989 DNAH14Q0VDD8 3507 aa9.52□□□□□ -0.88
TDP1-208ENST00000553989 K7ESF4 209 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 PIRO00625 290 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 SLC30A4O14863 429 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 SLC26A4O43511 780 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 FAM189A1O60320 539 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 CCDC192P0DO97 292 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 ATF6P18850 670 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 PLCG1P19174 1290 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 NMT1P30419 496 aaKnown RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 KRT85P78386 507 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 GRSF1Q12849 480 aaKnown RBP eCLIP9.52□□□□□ -0.89
TDP1-208ENST00000553989 KARSQ15046 597 aaKnown RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 CSRP2Q16527 193 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 SV2CQ496J9 727 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 GLIPR1L2Q4G1C9 344 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 ATL3Q6DD88 541 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 IL31Q6EBC2 164 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 SLFN12LQ6IEE8 588 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 CC2D1AQ6P1N0 951 aaPredicted RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 DCP1BQ8IZD4 617 aaKnown RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 SYNPOQ8N3V7 929 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 FAM160A2Q8N612 972 aaPredicted RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 MAB21L3Q8N8X9 362 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 C12orf50Q8NA57 414 aaPredicted RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 SPPL2BQ8TCT7 592 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 NOC3LQ8WTT2 800 aaKnown RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 C2orf15Q8WU43 125 aaKnown RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 POMGNT1Q8WZA1 660 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 RAD54LQ92698 747 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 CHAMP1Q96JM3 812 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 ZNF560Q96MR9 790 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 LRRC3BQ96PB8 259 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 MKNK1Q9BUB5 465 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 ZCWPW1Q9H0M4 648 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 ASB7Q9H672 318 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 DPP3Q9NY33 737 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 AGO2Q9UKV8 859 aaKnown RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 MAGED2Q9UNF1 606 aaPredicted RBP9.52□□□□□ -0.89
TDP1-208ENST00000553989 SLC8A2Q9UPR5 921 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 MTMR6Q9Y217 621 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 DERAQ9Y315 318 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 C2CD2Q9Y426 696 aa9.52□□□□□ -0.89
TDP1-208ENST00000553989 TISP43B9A030 160 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 AXIN1O15169 862 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 GDF9O60383 454 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 FOXD2O60548 495 aaPredicted RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 ATG13O75143 517 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 RPP40O75818 363 aaKnown RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 PAPSS2O95340 614 aaPredicted RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 BMP15O95972 392 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 CYP11A1P05108 521 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 PTMAP06454 111 aaKnown RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 ADRB1P08588 477 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 PXNP49023 591 aaPredicted RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 ZNF131P52739 623 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 TFAMQ00059 246 aaKnown RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 AMPD2Q01433 879 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 TSPY1Q01534 308 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 SMARCB1Q12824 385 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 CCINQ13939 588 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 ZC2HC1CQ53FD0 456 aaPredicted RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 WSCD1Q658N2 575 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 TRIM68Q6AZZ1 485 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 SLC39A4Q6P5W5 647 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 WDR5BQ86VZ2 330 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 CMTM8Q8IZV2 173 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 SLC39A7Q92504 469 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 LARP4BQ92615 738 aaKnown RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 MRPS31Q92665 395 aaKnown RBP9.51□□□□□ -0.89
TDP1-208ENST00000553989 DCBLD2Q96PD2 775 aa9.51□□□□□ -0.89
TDP1-208ENST00000553989 SLC46A2Q9BY10 475 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms