RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 CAVIN2O95810 425 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 DRD1P21728 446 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 GJA4P35212 333 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 ACOT2P49753 483 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 ZNF252P-AS1Q0IIN9 211 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 FOXC1Q12948 553 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 DMC1Q14565 340 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 KARSQ15046 597 aaKnown RBP9.81□□□□□ -0.84
SYNE2-209ENST00000553308 TMEM119Q4V9L6 283 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 CC2D1AQ6P1N0 951 aaPredicted RBP9.81□□□□□ -0.84
SYNE2-209ENST00000553308 SYT13Q7L8C5 426 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 METTL23Q86XA0 190 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 CD302Q8IX05 232 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 TTC16Q8NEE8 873 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 LRRC15Q8TF66 581 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 C2orf15Q8WU43 125 aaKnown RBP9.81□□□□□ -0.84
SYNE2-209ENST00000553308 KCNN1Q92952 543 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 REEP2Q9BRK0 252 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 ZMYM5Q9UJ78 669 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 MAGED2Q9UNF1 606 aaPredicted RBP9.81□□□□□ -0.84
SYNE2-209ENST00000553308 TCHHQ07283 1943 aa9.81□□□□□ -0.84
SYNE2-209ENST00000553308 ZNF638Q14966 1978 aaKnown RBP9.81□□□□□ -0.84
SYNE2-209ENST00000553308 VWA3AA6NCI4 1184 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 ANKRD63C9JTQ0 380 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 RHOBTB1O94844 696 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 TOP3BO95985 862 aaKnown RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 HOXB3P14651 431 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 PAX3P23760 479 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 DDX6P26196 483 aaKnown RBP eCLIP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 GBP1P32455 592 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 TAF6P49848 677 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 DGKEP52429 567 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 ATP2C1P98194 919 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 AMPD2Q01433 879 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 PSMD2Q13200 908 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 COL9A2Q14055 689 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 DHX8Q14562 1220 aaKnown RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 MTF1Q14872 753 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 PDGFRLQ15198 375 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 ZNF77Q15935 545 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 FBXO43Q4G163 708 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 SH3PXD2AQ5TCZ1 1133 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 MON1AQ86VX9 555 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 GPBP1Q86WP2 473 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 THEM5Q8N1Q8 247 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 CPA6Q8N4T0 437 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 MYCT1Q8N699 235 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 MRPS31Q92665 395 aaKnown RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 CD101Q93033 1021 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 ACDQ96AP0 544 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 CDK5RAP3Q96JB5 506 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 SLC22A12Q96S37 553 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 PI4K2AQ9BTU6 479 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 TMEM121BQ9BXQ6 578 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 TPSD1Q9BZJ3 242 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 ECT2Q9H8V3 914 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 SH2B1Q9NRF2 756 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-209ENST00000553308 EBF1Q9UH73 591 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 ODF2LQ9ULJ1 636 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 WASF3Q9UPY6 502 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 DERAQ9Y315 318 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 PCDHB5Q9Y5E4 795 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 WNT6Q9Y6F9 365 aa9.8□□□□□ -0.84
SYNE2-209ENST00000553308 CHD6Q8TD26 2715 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 ANTXRLA6NF34 631 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 PATE3B3GLJ2 98 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 PRPF40AO75400 957 aaKnown RBP9.79□□□□□ -0.84
SYNE2-209ENST00000553308 FAM13AO94988 1023 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 SEC24BO95487 1268 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 CSH1P0DML2 217 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 CSH2P0DML3 217 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 BCKDHBP21953 392 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 ZNF131P52739 623 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 FAM160A1Q05DH4 1040 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 SMARCB1Q12824 385 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 USP4Q13107 963 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 ZNF268Q14587 947 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-209ENST00000553308 CCDC142Q17RM4 750 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 DAB2IPQ5VWQ8 1189 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 PMS2CLQ68D20 193 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 EFCAB13Q8IY85 973 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 DCP1BQ8IZD4 617 aaKnown RBP9.79□□□□□ -0.84
SYNE2-209ENST00000553308 TSTD1Q8NFU3 115 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 OSCP1Q8WVF1 389 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 FIZ1Q96SL8 496 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 CYP2S1Q96SQ9 504 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 ADAM33Q9BZ11 813 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 CCSER1Q9C0I3 900 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 IKZF4Q9H2S9 585 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 ZHX3Q9H4I2 956 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 ASB7Q9H672 318 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 PARVGQ9HBI0 331 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 TRPC7Q9HCX4 862 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 DUS2Q9NX74 493 aaKnown RBP9.79□□□□□ -0.84
SYNE2-209ENST00000553308 DPP3Q9NY33 737 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 C2CD2Q9Y426 696 aa9.79□□□□□ -0.84
SYNE2-209ENST00000553308 NUP205Q92621 2012 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 KPNA7A9QM74 516 aa9.78□□□□□ -0.84
SYNE2-209ENST00000553308 CDX4O14627 284 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-209ENST00000553308 TRAK2O60296 914 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms