RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, human

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-221	ENST00000550914	SPATA18	Q8TC71	538 aa		13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	GIPC2	Q8TF65	315 aa		13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	UPF2	Q9HAU5	1272 aa	Known RBP	13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	GKN1	Q9NS71	199 aa		13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	TDP1	Q9NUW8	608 aa		13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	ABI2	Q9NYB9	513 aa	Predicted RBP	13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	CCDC39	Q9UFE4	941 aa		13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	USP24	Q9UPU5	2620 aa		13.85	□□□□□ -0.19
PTCH1-221	ENST00000550914	TRDMT1	O14717	391 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	ATG13	O75143	517 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	LDHA	P00338	332 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	GART	P22102	1010 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	GRSF1	Q12849	480 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	BFSP1	Q12934	665 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	ALCAM	Q13740	583 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	RUNX3	Q13761	415 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	L1TD1	Q5T7N2	865 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	HEATR6	Q6AI08	1181 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	MON1A	Q86VX9	555 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	BRSK2	Q8IWQ3	736 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	TMEM86A	Q8N2M4	240 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	LRRC52	Q8N7C0	313 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	TTC8	Q8TAM2	541 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	CACTIN	Q8WUQ7	758 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	MRPS31	Q92665	395 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	USP13	Q92995	863 aa	Predicted RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	TRMT2B	Q96GJ1	504 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	EPSTI1	Q96J88	318 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	LOXL4	Q96JB6	756 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	ACCS	Q96QU6	501 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	ACBD6	Q9BR61	282 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	MRPL44	Q9H9J2	332 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	OLFML3	Q9NRN5	406 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	UXT	Q9UBK9	157 aa	Predicted RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	HELZ	P42694	1942 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	CHD6	Q8TD26	2715 aa		13.84	□□□□□ -0.19
PTCH1-221	ENST00000550914	MYO16	Q9Y6X6	1858 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	DCDC2B	A2VCK2	349 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	HUS1	O60921	280 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	PDC	P20941	246 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	TXLNA	P40222	546 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	RPL10A	P62906	217 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	PDGFRL	Q15198	375 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	RRAGB	Q5VZM2	374 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	USP49	Q70CQ1	688 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	CEP68	Q76N32	757 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	SV2B	Q7L1I2	683 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	DYM	Q7RTS9	669 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	PDCL2	Q8N4E4	241 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	FAM160A2	Q8N612	972 aa	Predicted RBP	13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	MAB21L3	Q8N8X9	362 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	C1orf127	Q8N9H9	656 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	DDX1	Q92499	740 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	EXOC4	Q96A65	974 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	DNAJC19	Q96DA6	116 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	MYRFL	Q96LU7	910 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	FAM213A	Q9BRX8	229 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	SMG9	Q9H0W8	520 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	HPS4	Q9NQG7	708 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	TMLHE	Q9NVH6	421 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	C2orf42	Q9NWW7	574 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	GDAP2	Q9NXN4	497 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	ITGA11	Q9UKX5	1188 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	CCL26	Q9Y258	94 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	PCDHB13	Q9Y5F0	798 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	SRPRB	Q9Y5M8	271 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	PTPRD	P23468	1912 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	KIAA1549L	Q6ZVL6	1849 aa		13.83	□□□□□ -0.2
PTCH1-221	ENST00000550914	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	PRPF40A	O75400	957 aa	Known RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	AKAP3	O75969	853 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	NOL4	O94818	638 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	ADRB1	P08588	477 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	DRD1	P21728	446 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	POLR2B	P30876	1174 aa	Known RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	TFAM	Q00059	246 aa	Known RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	MYL7	Q01449	175 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	SRSF5	Q13243	272 aa	Known RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	CFAP221	Q4G0U5	840 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	FBXO43	Q4G163	708 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	INTS6L	Q5JSJ4	861 aa	Known RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	FSTL4	Q6MZW2	842 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	GAB3	Q8WWW8	586 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	PKMYT1	Q99640	499 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	PI4K2A	Q9BTU6	479 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	IKZF4	Q9H2S9	585 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	TMEM206	Q9H813	350 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	RBAK	Q9NYW8	714 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	FBXO2	Q9UK22	296 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	L1RE1	Q9UN81	338 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	AGAP1	Q9UPQ3	857 aa		13.82	□□□□□ -0.2
PTCH1-221	ENST00000550914	FRMD3	A2A2Y4	597 aa		13.81	□□□□□ -0.2
PTCH1-221	ENST00000550914	MYMK	A6NI61	221 aa		13.81	□□□□□ -0.2
PTCH1-221	ENST00000550914	KIAA0391	O15091	583 aa	Known RBP	13.81	□□□□□ -0.2
PTCH1-221	ENST00000550914	EXTL3	O43909	919 aa		13.81	□□□□□ -0.2
PTCH1-221	ENST00000550914	GCNT3	O95395	438 aa		13.81	□□□□□ -0.2

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